Gene detail

Gene detail information of Glyur000537s00024614.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58140.1	2.00E-166	phenylalanyl-tRNA synthetase class IIc family protein
NR	XP_006603041.1	0	PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 [Glycine max]
COG	YP_003825775.1	7.00E-38	phenylalanyl-tRNA synthetase subunit alpha [Thermosediminibacter oceani DSM 16646]
Swissprot	tr\|Q94K73\|SYFM_ARATH	0	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7MVE7\|K7MVE7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G52890.2}

Sequence

Transcript Sequence

>Glyur000537s00024614.2
GTGCATTCCAAAATGGGGATTGTTATCTCTATTTACCGCTATCCCCAATAGGAGTGAGCTTCGCTTTCTTTGCCATTTTTTTTTATTCATTTGTTTTCTTATCGGATTGAAGTCTCTATTCAGCAATCGGGTTATCTCTAGTTAGCTATCCATTCCATCCTGTGAAGCACAGAAACAGCAGTGGGTAGTTAGTTGCCTGTAAACGTTGTTTCTGTCTTTCTGTCAATTGCAACAAACATAAAATCTCTACTCATTTTGCGTGGCAATGGCGATCTCTTCTGTGCATGCCATACTTTCTGCCAGGGCCTCTCTCTTTCGTCAAAGTAATGGTCTAAGAAGCTTAACATTTTGTTTACCTTTCTCATCTTCCACTGCTTCTGTCTCTACTGACAAGTTTTCGCGGAAGAAATGGAGGCAGCCGGTTTTCTCAGTGTTGGAGGTTGGTGGAGTCAAGATTAGCAGAGAAGATGTAGTGNGGGATGATCCAACAAATAATGTGCCAGACAACATATTTTCAAAACTTGGAATGCAGCTTCACAGGAGGGATCATCATCCTCTCGGGATACTNAAGAATGCGATATATGAGTATTTTGACACAAATTATTCAAATAAGTTCAATAAGTTTGATGACCTTTCTCCTATTGTTTCAGTGAAGGAGAACTTTGATGATGTCTTGGTTCCTGAAGACCATGTGAGTAGGAGCTACAATGATACATACTACATAGACCCTCAAACTGTTTTAAGGTGCCACACGAGTGCTCATCAGGCAGAATTATTGAGAAAGGGATATACACATTTCCTTGTTACAGGAGATGTTTATCGAAGGGATTCAATCGATTCTACTCATTATCCCGTCTTTCATCAGATGGAAGGCTTTCGGGTTTTTGTTCCGGATGAATGGGAGGCATCTGGGATGGATGCCACATCATTTTCAGCAGCAGACCTAAAGAAATGCCTTGAGGGTCTAGCACGCCATTTATTTGGTGATGTGGAAATGCGCTGGGTGGATACCTATTTCCCATTTACTAATCCATCATTTGAACTTGAAATATATTTCAAGGAGAATTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAATCTAATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCAGATATTCGTCTCTTTTGGTCGAATGATGAGCGATTTACCTCCCAGTTCTCCAAGGGTCAGTTTGGGGTCAAATTTAAGCCATTTTCAAAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCATATAGGTCCATGGAACGTTCTCTTACTGATGATGAAGTTAACGATCTACAGTGGAAAGTAAGAGAACAGGTGCAGAACAAATTGGATGTTGTCATGAGATAAGGTTTTAATGCGCTAAAATTATNCAGTTTTGCTGTGTTTTTTGTTCTCAATTTTTTTTAATGTACAAATGTTCTTACCTCCCCCTACGCGGAATCTGAACAACGCTATAAACAGATGTATTATTTATTTCCGCATAGTGAATGTGCACTACATAGCTAGCCCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00537	108140	115866	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01889	FARSA, pheS	EC:6.1.1.20	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006432 phenylalanyl-tRNA aminoacylation

GO:0008033 tRNA processing

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0000287 magnesium ion binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004826 phenylalanine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000537s00024614.2	PF01409.15	tRNA-synt_2d	91	326	3.30E-50
Glyur000537s00024614.2	PF03147.9	FDX-ACB	339	394	9.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.279
SRR1783600	control	7.299
SRR1783602	moderate drought stress	7.645
SRR1811619	moderate drought stress	7.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.948
DRR006520	Root Summer glycyrrhizin high producing strain	12.259
DRR006521	Root Winter glycyrrhizin high producing strain	7.214
DRR006522	Root Winter glycyrrhizin high producing strain	7.166
DRR006523	Root Summer glycyrrhizin low producing strain	10.458
DRR006524	Root Summer glycyrrhizin low producing strain	10.664
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.043
SRR2868004	Drought Stress (root)	13.772
SRR2967015	Control (root)	11.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.744
SRR9715740	Leaf	28.516
SRR9715741	Leaf	16.668
SRR9715739	Root	3.951
SRR9715742	Root	5.820
SRR9715743	Root	6.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.866
SRR8749028	MeJA induced 9h	12.374
SRR8749029	MeJA induced 9h	8.280
SRR8749030	Uninduced	14.747
SRR8749031	Uninduced	7.580
SRR8749032	Uninduced	7.290

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.670
SRR8400027	Control - Root	15.522