Gene detail information of Glyur000536s00018933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62770.1 | 2.00E-131 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003521552.1 | 0 | PREDICTED: autophagy-related protein 18a-like [Glycine max] |
| Swissprot | tr|Q93VB2|AT18A_ARATH | 9.00E-166 | Autophagy-related protein 18a |
| trEMBL | tr|I1JQJ8|I1JQJ8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00536 | 133421 | 136123 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000536s00018933.1 | PF00400.27 | WD40 | 232 | 257 | 0.1 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.847 |
| SRR1783600 | control | 2.056 |
| SRR1783602 | moderate drought stress | 2.392 |
| SRR1811619 | moderate drought stress | 1.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.648 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.902 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.306 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.285 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.370 |
| SRR2868004 | Drought Stress (root) | 4.350 |
| SRR2967015 | Control (root) | 4.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.702 |
| SRR9715740 | Leaf | 1.837 |
| SRR9715741 | Leaf | 1.445 |
| SRR9715739 | Root | 1.530 |
| SRR9715742 | Root | 1.442 |
| SRR9715743 | Root | 1.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.836 |
| SRR8749028 | MeJA induced 9h | 1.450 |
| SRR8749029 | MeJA induced 9h | 1.540 |
| SRR8749030 | Uninduced | 1.819 |
| SRR8749031 | Uninduced | 0.413 |
| SRR8749032 | Uninduced | 0.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.386 |
| SRR8400027 | Control - Root | 2.769 |