Gene detail information of Glyur000536s00018927 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47750.1 | 0 | putative indole-3-acetic acid-amido synthetase GH3.9 |
| NR | XP_004496050.1 | 0 | PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9-like [Cicer arietinum] |
| COG | YP_003444757.1 | 6.00E-25 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|O82243|GH39_ARATH | 0 | Putative indole-3-acetic acid-amido synthetase GH3.9 |
| trEMBL | tr|A0A072VP69|A0A072VP69_MEDTR | 0 | Indole-3-acetic acid-amido synthetase {ECO:0000313|EMBL:KEH43223.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00536 | 87164 | 90515 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000536s00018927.1 | PF03321.8 | GH3 | 15 | 579 | 1.10E-190 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.463 |
| SRR1783600 | control | 2.392 |
| SRR1783602 | moderate drought stress | 5.288 |
| SRR1811619 | moderate drought stress | 5.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.808 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.763 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.464 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.881 |
| SRR2868004 | Drought Stress (root) | 3.008 |
| SRR2967015 | Control (root) | 6.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.071 |
| SRR9715740 | Leaf | 0.825 |
| SRR9715741 | Leaf | 5.591 |
| SRR9715739 | Root | 0.110 |
| SRR9715742 | Root | 9.254 |
| SRR9715743 | Root | 6.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.998 |
| SRR8400027 | Control - Root | 20.854 |