Gene detail

Gene detail information of Glyur000536s00018920

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02460.1	0	DNA mismatch repair protein, putative
NR	XP_004495972.1	0	PREDICTED: DNA mismatch repair protein PMS1-like [Cicer arietinum]
COG	YP_004266066.1	6.00E-46	DNA mismatch repair protein mutL [Syntrophobotulus glycolicus DSM 8271]
Swissprot	tr\|Q941I6\|PMS1_ARATH	0	DNA mismatch repair protein PMS1
trEMBL	tr\|I1JFI1\|I1JFI1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G17420.1}

Sequence

Transcript Sequence

>Glyur000536s00018920.1
AACAAGGTAAAAGCCTCAAACGTTATTTTTCTACTCTTTCTTCTTCTCACTCTGAGGTTCGTTCCCGCTTCAGTTTTGGCGGCAAAACGTGGCAGGTTTTGTGTCAGTCACAATTCGTATGGGGTTTCGGTGGCTCTGATCACAGAGGAAACACTGAGACGGTTAATCGAGCGTTGGTAAGCCGCAGGCAGCAGCAATGGCGGTTGAATCGCAAACTATAAAGCCAATCGCAAAGGGAATCGTTCACAGAATCTGTGCGGGTCAAGTGATCCTCGACCTCTCTTCCGCGGTTAAGGAACTCGTCGAGAACAGCTTGGACGCCGGCGCCACCAGCATCGAAATCTCCCTCAAGGACTTCGGCGAAGAATGGTTTCAGGTCACCGATAACGGCTGCGGCATTTCCCCCAACAGTTTCAAGGTTCTCGCACTCAAGCATCATACCTCAAAATTATCAGAATTTCATGATCTTCAGTCTCTGACTACTTTTGGCTTCAGAGGAGAGGCGCTGAGTTCCCTTTGTGCTCTGGGAAACTTGACCGTTGAAACGAGAACGGTGAACGAGGCGGTTGCTACTCACTTGACTTTTGACCATTCCGGTGTTCTTGTAGGCGAGAGGAAAACCGCACGGCAGGTTGGAACCACTGTCACTGTTAAGAAGTTGTTCTCCAATCTGCCTGTCCGGAGCAAGGAGTTTAGTCGTAACATACGCAAGGAATATGGCAAGTTGGTTTCTCTGTTGAATGCATATGCCCTTATAGCAAAAGGTGTTCGTTTTGTCTGCACCAACACAACTGGCAGAAATGCAAGGTCTGTGGTACTTAAAACGCAAGGAAGTGATTCTCTAAAAGATAACATTGTGACTGTGCTCGGCATGAATACTTTCAACTGCTTAGAGCCCNTGACATTATGTATATCTGAGAGTTGCAAAGTTGATGGTTTTCTTTCCAAGTCTGGACAGGGTAACGGACGACATTTAGGAGATAGGCAGTATTTTTTTGTAAACGGTAGACCAGTGGATATGCCTAAAGTCAGCAAACTTGTGAATGAGTTATATAAAAGTGCAAACTCTAAACAATATCCCATTGCAATCTTAAATTTTACAGTTCCCACAAAAGTGTATGATGTCAATGTGACTCCTGATAAGAGAAAAATATTTTTTTCTGAAGAAACTGCCATATTGCAAGCCCTNAGAGAGGGCTTTCAACAAATTTATTCTCCCAACAATGTCTGTTATTCTGTCAACGAAATTATGGAGCCTGATGTAAAAGAAGACTGTGTTGAGTTGTGCTCTTCTCATAGAAAGTCTCCTATCGCAATGAAACCATCATCCCCTAATGGCAGTCTTCCTCAGGAAGAGCATTATACTGAGTGCAATAATGGTAGTATTTCTGGGGATGAGCATAATACTGACCACAACAATGACAGTATATCTCACGATGAGCATAAGGAGAAACATATTTCTGATTCCAAAAACGCTTCTGAATCTGTTAATGATGATCAATGCTCACATGTTGAAAAAGGGTCAATTCGTGAGAATGATGGGAATTTAATGGGCCAAGAGTTCACACTCAGAGTGCATGGGACTTTATATGCTGATAAGAGTGAAAGACAGTCAGCATGTACTNGTAGTGTTGTATGCAAAAAAGCTAGGCTGGTCTCAAGGACAGGTGAGAGTGGGGACACTTCTAATAGATATTCATATAATCATTCAAGACATGTTCAGTCAACTCTTAACAATTTTGTTACTGTGAATAAAAGAAGTCGTGATAGCATCATTACAGCCTTATCTGAAGTGCCCGTCCTTAGAAANCAAGCTCCTCATAGTCAATTGAAGACTGCAAATACTGAAACACATGACTTGATTANGAGATCATCATTTCATTTTGACCAAATTAATGAAACTGCTAAGCCAAGTGAGATTGAATATTTGCAGCAACCTGATCCTGATAGCATCATCTACAAAAATGAAAATTCAANTTCTTTTAGAGGTGGCTCTACTGACAGAGAACCCAAAATGGAATTGGATCAAGAGAATAAATCATATCTTGCTGATACAGCATCAATTACATCTTCTAGCAACGATCTGATCAATTCTACAGAGCATGTTTTGGCCTCAGACACTCCATCACATTCATCGCCTGTATGGTTATCTCCTTCTAAGTCTTCTGATCGGAAGATATGCTCCAATATGCAATTTTCTTTTCAAGACCTTAAGAATAGGAGACAGAAGAGGCTTTCTTTGATGCNTTCCAGTAAATTTAGATGTGGAGAAGCTAATGGCAAAAGTTGCTATATGGCTGCCACTTTGGAGCTTTCACAACCAGAAGTTGAACAGCAGAAAGAAAGGGTTTTAGCAGCAGCATCTACTGAACTGGAAAGATTGTTCAAGAAGGAAGACTTCAGCAGAATGAAGGTGATTGGGCAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGATTTATTCATTGTGGATCAGCATGCTGCTGATGAGAAATACAATTTTGAGTGTCTGTCCCAATCAACCATCTTGAACCAACAGCCTCTGATTAGGCCGATAAGATTGGAATTATCCCCTGAAGAGGAAATAGTTGCTTCAATGCACATGGACATAATCAGGAAGAATGGATTTACTTTGGAAGAGGATCCAGATGCACCACCTGGATGCCGTTATAAATTAAAGTCTGTCCCCTTCAGTAAAAACATTATGTTTGGAATTACAGATGTTAAGGAGCTGATCTCTACCCTGTCTGATGGTGATGGTCATGGGGAATGTTCCATTGTTGGTAGTTATAAACTGGACACCTCAGATTCCATTTGCCCTTCAAGAGTTCGTGCAATGCTGGCATCACGTGCATGTCGATCCTCAATTATGATTGGTGATGCACTTGGAAGAAATGAAATGCAGAAGATACTTGAGCATTTGGCCGAGCTCAAGTCCCCATGGAATTGTCCCCATGGCAGGCCCACCATGCGCCATTTAGTTGACTTGGCAAAAGTTCACAAGAGGTCAGAATTAACAATGCAGATGTAATTTTTTTTTTTGGTCAATAATGCAGATGTAATTAAGACTCGTTGTTATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00536	31932	39345	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006298 mismatch repair

cellular_component
GO:0032300 mismatch repair complex

molecular_function

GO:0005524 ATP binding

GO:0030983 mismatched DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000536s00018920.1	PF13589.1	HATPase_c_3	28	132	2.50E-15
Glyur000536s00018920.1	PF01119.14	DNA_mis_repair	221	339	3.80E-25
Glyur000536s00018920.1	PF08676.6	MutL_C	739	899	2.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.675
SRR1783600	control	3.626
SRR1783602	moderate drought stress	6.813
SRR1811619	moderate drought stress	6.745

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.435
DRR006520	Root Summer glycyrrhizin high producing strain	4.394
DRR006521	Root Winter glycyrrhizin high producing strain	6.777
DRR006522	Root Winter glycyrrhizin high producing strain	6.467
DRR006523	Root Summer glycyrrhizin low producing strain	3.940
DRR006524	Root Summer glycyrrhizin low producing strain	3.869
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.541
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.449

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.931
SRR2868004	Drought Stress (root)	5.105
SRR2967015	Control (root)	6.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.785
SRR9715740	Leaf	5.051
SRR9715741	Leaf	4.041
SRR9715739	Root	0.991
SRR9715742	Root	3.056
SRR9715743	Root	2.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.693
SRR8749028	MeJA induced 9h	6.782
SRR8749029	MeJA induced 9h	3.186
SRR8749030	Uninduced	2.034
SRR8749031	Uninduced	1.815
SRR8749032	Uninduced	2.529

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.223
SRR8400027	Control - Root	10.629