Gene detail information of Glyur000536s00018919 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02450.2 | 8.00E-21 | HSP20-like chaperones superfamily protein |
| NR | XP_004495968.1 | 1.83E-86 | PREDICTED: uncharacterized protein OsI_027940-like [Cicer arietinum] |
| Swissprot | tr|P0C8Z0|Y8359_ORYSI | 1.00E-45 | Uncharacterized protein OsI_027940 |
| trEMBL | tr|G7IF81|G7IF81_MEDTR | 3.00E-79 | CS domain protein {ECO:0000313|EMBL:AES61800.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00536 | 27517 | 29234 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000536s00018919.1 | PF04969.11 | CS | 23 | 82 | 6.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.163 |
| SRR1783600 | control | 16.291 |
| SRR1783602 | moderate drought stress | 13.470 |
| SRR1811619 | moderate drought stress | 14.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.759 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.315 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.093 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.895 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.914 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.038 |
| SRR2868004 | Drought Stress (root) | 33.732 |
| SRR2967015 | Control (root) | 32.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.512 |
| SRR9715740 | Leaf | 9.496 |
| SRR9715741 | Leaf | 16.934 |
| SRR9715739 | Root | 2.137 |
| SRR9715742 | Root | 12.836 |
| SRR9715743 | Root | 10.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.526 |
| SRR8749028 | MeJA induced 9h | 17.604 |
| SRR8749029 | MeJA induced 9h | 25.333 |
| SRR8749030 | Uninduced | 12.982 |
| SRR8749031 | Uninduced | 5.545 |
| SRR8749032 | Uninduced | 13.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.100 |
| SRR8400027 | Control - Root | 12.017 |