Gene detail information of Glyur000536s00018916 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02450.2 | 2.00E-29 | HSP20-like chaperones superfamily protein |
| NR | XP_004495968.1 | 1.28E-99 | PREDICTED: uncharacterized protein OsI_027940-like [Cicer arietinum] |
| Swissprot | tr|P0C8Z0|Y8359_ORYSI | 2.00E-59 | Uncharacterized protein OsI_027940 |
| trEMBL | tr|G7IF81|G7IF81_MEDTR | 3.00E-92 | CS domain protein {ECO:0000313|EMBL:AES61800.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00536 | 14679 | 17745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000536s00018916.1 | PF04969.11 | CS | 6 | 81 | 2.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.508 |
| SRR1783600 | control | 13.488 |
| SRR1783602 | moderate drought stress | 14.516 |
| SRR1811619 | moderate drought stress | 14.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.703 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.780 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.424 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.587 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.501 |
| SRR2868004 | Drought Stress (root) | 26.290 |
| SRR2967015 | Control (root) | 25.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.258 |
| SRR9715740 | Leaf | 72.997 |
| SRR9715741 | Leaf | 38.843 |
| SRR9715739 | Root | 16.049 |
| SRR9715742 | Root | 21.075 |
| SRR9715743 | Root | 18.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.184 |
| SRR8749028 | MeJA induced 9h | 44.481 |
| SRR8749029 | MeJA induced 9h | 51.669 |
| SRR8749030 | Uninduced | 22.036 |
| SRR8749031 | Uninduced | 12.599 |
| SRR8749032 | Uninduced | 13.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.408 |
| SRR8400027 | Control - Root | 58.549 |