Gene detail

Gene detail information of Glyur000535s00027373

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10350.1	5.00E-61	DNAJ heat shock family protein
NR	XP_003519138.1	5.05E-130	PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max]
COG	YP_943939.1	2.00E-27	chaperone DnaJ domain-containing protein [Psychromonas ingrahamii 37]
Swissprot	tr\|Q9LZK5\|DNJ19_ARATH	1.00E-29	DnaJ protein ERDJ3B (Precursor)
trEMBL	tr\|I1JBS7\|I1JBS7_SOYBN	2.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02740.1}

Sequence

Transcript Sequence

>Glyur000535s00027373.1
TCATAATTCATAAATCACTTCTGAAGCGTGATTTTCTGCCACTTTTGCGCGTTACTATATAAGTACCACTCTCCTCCCACAACTGGCTACTACTCCCACGACCCACTGATTCATAAGTGAATTCCACGTACCCTTTTGCAACCACTCACAGTCACAGTCACAGGGCAAAAGCAGAGAAAGTTTCTTCTTTTCTTCACCCCACAAACAAAGCACTGAACTGAACTGAATTGATTTCCACGCAGAATATTCATCTTCCTGTTTTTCTTATTGTGCTGACATGGGTATTAGTGACTACTACAAGAGACTGAAGAAGGCTTATAAGAGATTGGCAATGAAGTGGCACCCAGATAAGAAGAACGAATACCCTCTATGGNAAGAAGAGTTTGATAAGGCCAATTTCAAACAGGTTTCTGAGGCCTATGATGTTCTCAGTGACCCAAAGAAGNGCCAGCTTTACGACTTGTACGGCCACTACCCCCTCAACCCTCATCGCTTCACCAAGGCAAAAAATAATGGTGATGGTGATGTTGTTGGGAACCATAACAACCTGATAACGAAGGAAAGTAAAGNTGCAGGAGTTGTTGAGAGGAGGTTGGCGTGTACCCTTGAGGAGCTTTACAATGGTTGCATAAAAACAGTGAAAATCACAAGGAGTTTTCCTGATGAATTTGGAAAGATGAAGTCTAGAGAAGAAATGTTGAAGATATACATTGAACCTGGTTGGAAGAAGGGCATAGAGATTACATTTCATGGGAAAGGAAACCAAGAACTGGGATATGCTCCAGGTGATCTAATGTTTGTGGTGGATGAGAGGCCACATGCATTTTTCAAGAGGGAAGGAAGTGATTTGGTAATGATCCAGAAGATANTGCTTCTAGATGCTCTAGTAGGGAAGACTCTCAACTTGACAACCTTGGATGGAAGAGACATCACAATCCAATTGACTGATATTGTGAAACCTGGCTATGAGGTTGTGGTCCCAAATGAAGGCATGCCCATTACACAGGAACCAAGCAAGAAAGGAAACCTCAGAATCAAGTTTGATGTTATGTTCCCTTCAAGGTTGACCACACTGCAGAAACATGACCTGAGAAGGATCTTGAGTGATGCTGATTACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00535	140264	141959	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000535s00027373.1	PF00226.26	DnaJ	8	61	2.20E-14
Glyur000535s00027373.1	PF01556.13	CTDII	190	268	4.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.349
SRR1783600	control	1.054
SRR1783602	moderate drought stress	0.685
SRR1811619	moderate drought stress	0.687

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.556
DRR006520	Root Summer glycyrrhizin high producing strain	4.536
DRR006521	Root Winter glycyrrhizin high producing strain	0.598
DRR006522	Root Winter glycyrrhizin high producing strain	0.547
DRR006523	Root Summer glycyrrhizin low producing strain	5.279
DRR006524	Root Summer glycyrrhizin low producing strain	4.889
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.430

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.521
SRR2868004	Drought Stress (root)	2.473
SRR2967015	Control (root)	2.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.443
SRR9715740	Leaf	1.100
SRR9715741	Leaf	0.324
SRR9715739	Root	0.550
SRR9715742	Root	2.000
SRR9715743	Root	1.727

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.257
SRR8749028	MeJA induced 9h	0.140
SRR8749029	MeJA induced 9h	0.484
SRR8749030	Uninduced	0.252
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.610
SRR8400027	Control - Root	0.795