Gene detail information of Glyur000535s00027371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KHN13477.1 | 2.01E-24 | Thioredoxin H2 [Glycine soja] |
| Swissprot | tr|Q39362|TRXH2_BRANA | 3.00E-10 | Thioredoxin H-type 2 |
| trEMBL | tr|I1KXP4|I1KXP4_SOYBN | 8.00E-25 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00535 | 137546 | 138600 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000535s00027371.1 | PF00085.15 | Thioredoxin | 29 | 84 | 5.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.801 |
| SRR1783600 | control | 6.186 |
| SRR1783602 | moderate drought stress | 1.082 |
| SRR1811619 | moderate drought stress | 1.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.871 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 344.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 339.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.745 |
| SRR2868004 | Drought Stress (root) | 4.326 |
| SRR2967015 | Control (root) | 1.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 172.940 |
| SRR9715740 | Leaf | 288.250 |
| SRR9715741 | Leaf | 306.688 |
| SRR9715739 | Root | 1.213 |
| SRR9715742 | Root | 18.614 |
| SRR9715743 | Root | 10.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.071 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.046 |
| SRR8400027 | Control - Root | 4.982 |