Gene detail information of Glyur000535s00027370 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39950.1 | 1.00E-26 | thioredoxin 2 |
| NR | XP_007157414.1 | 7.80E-74 | hypothetical protein PHAVU_002G068100g [Phaseolus vulgaris] |
| COG | YP_006863403.1 | 2.00E-21 | thioredoxin [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|Q38879|TRXH2_ARATH | 2.00E-43 | Thioredoxin H2 |
| trEMBL | tr|V7CJ61|V7CJ61_PHAVU | 3.00E-74 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00535 | 127326 | 128217 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000535s00027370.1 | PF00085.15 | Thioredoxin | 31 | 124 | 3.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.931 |
| SRR1783600 | control | 6.102 |
| SRR1783602 | moderate drought stress | 1.921 |
| SRR1811619 | moderate drought stress | 2.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.497 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.490 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.269 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.114 |
| SRR2868004 | Drought Stress (root) | 4.100 |
| SRR2967015 | Control (root) | 3.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.669 |
| SRR9715740 | Leaf | 0.398 |
| SRR9715741 | Leaf | 0.586 |
| SRR9715739 | Root | 0.465 |
| SRR9715742 | Root | 0.521 |
| SRR9715743 | Root | 0.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.455 |
| SRR8400027 | Control - Root | 1.252 |