Gene detail information of Glyur000535s00027369 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39950.1 | 2.00E-25 | thioredoxin 2 |
| NR | XP_004489966.1 | 3.40E-67 | PREDICTED: thioredoxin H2-like [Cicer arietinum] |
| COG | YP_254764.1 | 1.00E-19 | thioredoxin [Sulfolobus acidocaldarius DSM 639] |
| Swissprot | tr|Q38879|TRXH2_ARATH | 1.00E-43 | Thioredoxin H2 |
| trEMBL | tr|V7CJ61|V7CJ61_PHAVU | 3.00E-67 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00535 | 119751 | 120914 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000535s00027369.1 | PF00085.15 | Thioredoxin | 31 | 123 | 6.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.924 |
| SRR1783600 | control | 45.977 |
| SRR1783602 | moderate drought stress | 11.707 |
| SRR1811619 | moderate drought stress | 11.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 127.150 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.825 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.182 |
| SRR2868004 | Drought Stress (root) | 58.788 |
| SRR2967015 | Control (root) | 38.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.702 |
| SRR9715740 | Leaf | 11.536 |
| SRR9715741 | Leaf | 5.726 |
| SRR9715739 | Root | 15.709 |
| SRR9715742 | Root | 22.277 |
| SRR9715743 | Root | 20.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.267 |
| SRR8749030 | Uninduced | 0.078 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.079 |
| SRR8400027 | Control - Root | 39.698 |