Gene detail

Gene detail information of Glyur000535s00027362

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69870.1	0	nitrate transporter 1.7
NR	XP_003519778.1	0	PREDICTED: nitrate transporter 1.7-like [Glycine max]
COG	YP_002494545.1	1.00E-26	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q8RX77\|PTR21_ARATH	0	Protein NRT1/ PTR FAMILY 2.13
trEMBL	tr\|I1JBS2\|I1JBS2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02680.1}

Sequence

Transcript Sequence

>Glyur000535s00027362.1
ATGGAGGTGGAGAAAAAGGGAAACGACGACAAAAGATCTTTCTGGTGCTTAAGAAAGTCACCAAGAGAGGATGCTAGTTTGGATTCCTCAAATTCAAGGGCAAAATTAATGGAAGAAAAGCCTGGATGGAAGGCCGNTCCCTATATCTTAGGAAATGAGACAATTGAGAGGATAGCGACATTTGGCATGACAGCCAATTTCATGGTGTATTTGTTGAGAGTGTTCAACTTGGGTCAGGTTGCAGCTGCCAATGTTCTCAGCATATGGATTGGAGTGAGCAATTGCATACCAATTGTTGGTGCCGTTATTGCTGATGCCCTTTTAGGGAAATTCAGAACCATTGCTATGGCATCATTTGGAACACTTGTGGGAATAGTGATAATAACATTAACAGCAGGGGTGCCACAACTTCATCCTCCAAGTTGCACTAATCAGCATCAGCAGCAAGAGTGTGTGCCCCCAACTAGTTTTCAGCTTGCCACCTTAATCATTGGCTTGTCCTGGCTTGCTATAGGAACAGGTGGAATCAGACCCTGTGCTATTCCCTTTGCAGTTGATCAATTTGACACAAATACCCCTGAGGGAAGGAAAGGGGTGAGCAGGTTCTATAACTGGTACTACACCACACAGACAGTGGTCATGTTGATCAATGCCACAGTCATAGTTTACCTCCAAAACAAGAACTGGATCTTGGGTTTTGGCACACTGGGGATTCTCATGTTGTTTGCAATAATCGTATTCTTAGCGGGGAAAAGTGTTTATCTTTGCATTCCAGCTGAGGGGAGCATATTTTCTGGTATTGTGCAAGTGTTTGTTGCAGCTCATAAGAAGCATCGCCTCCAAATTCCTGCAAAGGAAGAGGATTGTGTTTACTATGATCCCCCTCTAGAAGATGGTAAAGCACTGAAGATGCCTTTAACCAAACAACTTAGACACATAGGACCCTTCCACAACATCCCAGCAGCATCATTCAACATAGTGTCCCTAATCACCATCGGGATTTGGCTCCCCTGCTACGACCTCTTCCTGCAACCCTTTCTAGCAAAACTCACAAAACAAGAAGAAGGCTTAACAAGCCTCCAGAAGATCGTAATCGGTAACATCTTCTCTGTTCTCACAATGGTAAGTGCTGGCTTAGTAGAATTCCGAAGAAGGGGTTTAGCACACGATGCACGTGCACCACCCATGTCTGCCACGTGGATGGCACCACAGTATGTGATGTTGGGGTTCTGTGAGGTGTTTACACTTGTTGGGCACATTCAGTTCTACAACAGTGAATCACCTGATAAGATGAAGAGTGTTGGGAATTCGTTGCAGTATCTTGTGCAGGCGGTTTCTACTTATGTTGGTGTGTTGGTTATGAATGTTGTTGATAAAGTTACCCGAAGGGGTGGGAAAACCGGGTGGCTTGATAGTGACATTGATGCTGGGAGGTTGGATTACTATTACTTCCTCATAGCTGGGTTAGGTGCAATCAATCTTGTTTACCTCTTGTTCTGTGTTGAACGGTACCGTTACAAGGTCGTTGTGAAAGTCGTAGATGAAGAAGAAAAAATGTTGGGTTCAGAGGATAAGGGAACAAAGCTCTCTGGCTTTCATTCTGTCTCTTCCTCTCCTTGGTCACTTCTATGCTGCAGAAGTGGCTTTTCTTCAACAGCAGAAAATGAACCAAACAATGAAAAACATGCAAGCAAAAATAGTTCAGAAATATCATCAGCTACTACCATGAAGCCTGGAGGATGGAAGGCCATGCCTTTTATTTTAGGAAATGAAACGTTTGAGAGGTTGGCAGCATTTGGTTTGTTTGCAAACTTTATGGTGTATTTGACAAGAGAGTTTCATTTGGACCAAGTTTCTGCCTCAAACATTCTCAACATATGGGGTGGTGTTACCAACTTCCTCCCCTTGCTTGGGGCCTTCGTTTCTGATACCTACGTGGGTCGCTTCCGGACTATAGCTTTTGCTTCCTTCTTTTCCCTACTGCAACAAGCACTGAATCAATGTGCTAGAGCAAGCACATCAAATGTGGGTGTTCTTCTTTTGGGACTATGCTTTTTAAGCATAGGGTCTGCAGGGATAAGGCCATGTAGCATACCCTTTGGTGTGGATCAATTTGACCCCACAACTGATGAAGGGAAGAAAGGGATCAATAGCTTCTTTAATTGGTACTACACAACATTCACAGTGGTGTTGTTGATCACACAAACAGTGGTTGTCTATATTCAAGACTCCATTAGCTGGACTTGGGGTTTTGCAATTCCAACTGTGTGCATGTTCTGTTCCATAGTCATGTTCTTTGTAGGGAAAAGAATCTACGTGCATGTGAAGCCTGAAGGGAGCATTTGTTCTAGTATTGCACAGGTTCTAGTGGCTTCCTATAGAAAGAGAAAAGTTAAGGTTCCAAGTGAGAAGCAGGTGGTNGTAGATGGGATTTTCTATGATCCTCCACTAACTGGGTCTGTTGTTTTGTCAAAGCTTCCTTTAACCAAACAATTCAGGGTATTGAATAAAGCAGCTGTAATAATGGAGGGAGAGCTAAACCCAGATGGGAGCAGAGTAAATCAGTGGACACTTGTCAGCATCCAACAAGTAGAAGAGGTTAAATGCTTAGCAAGAATTTTCCCAATTTGGGCTGCTGGTATCCTTGGTTTCACATCCATGGCACAACAAGGAACATTCACTGTGTCACAAGCCTTGAAAATGGACAGACACCTAGGACCAAAGTTCCAAATCCCAGCTGGTTCACTTGGGGTCATATCATTCATCACCATAGGTTTGTGGGTCCCATTCTATGACAGGGTATGTGTACCATCCCTAAGAAGGGTCACTAAGCATGAAGGGGGTATCACACTCCTACAAAGAATTGGAATTGGCATGGTGTTCTCTGTTCTGGCAATGATTGTAGCTGGCTTGGTGGAAAAAGTGAGAAGAGATGTTGCAAATTCAAATCCAAGTCCACTAGGGATTGCTCCTATGTCAGTCATGTGGCTGGCACCACAATTAGTCCTGATGGGTCTATGTGAGGCATTCAATATAATTGGACTAATTGAGTTCTTTAACAGGCAATTCCCTGAACACATGAGAAGCATTGCCAATGCATTGTTCTCATGCTCTTTTGCTTTGGCTAACTATGTTAGCAGCATATTGGTCTCCTCAGTTCACCATGCCACTAGGACACATAGCCATCCTGATTGGTTGACAAATGACATAAATGCTGGAAGGCTAGATTACTTTTACTACCTTCTAGCTGGGATTGGAGTCCTTAACTTGGTTTATTTTCTGTATGTTTCTCAAGGATATCAGTACAAGGGAAGTGTTGACCTCCAAGATAAAGCTCAAGACATGGAGCTTGGCTCAAAAGGAGAATTAGATTACTATAATGCTAAGTATAATGAGGATGATAAATAAATTAAGGGCAAGGAAAAAAATAAATTAAAAAAGGATATGCATGTCTTTTCTGTGTGGCATGTGAACTATATATGTAATAGTAATGTTTCTATCATTCAGTTTTCTATAGTCTTGTACAAATTAATATAATCTCAAGTTATTTTAAATAATGAGTAGTAGATTGAAATCAGGAAA

Protein Sequence

>Glyur000535s00027362.1
MEVEKKGNDDKRSFWCLRKSPREDASLDSSNSRAKLMEEKPGWKAXPYILGNETIERIATFGMTANFMVYLLRVFNLGQVAAANVLSIWIGVSNCIPIVGAVIADALLGKFRTIAMASFGTLVGIVIITLTAGVPQLHPPSCTNQHQQQECVPPTSFQLATLIIGLSWLAIGTGGIRPCAIPFAVDQFDTNTPEGRKGVSRFYNWYYTTQTVVMLINATVIVYLQNKNWILGFGTLGILMLFAIIVFLAGKSVYLCIPAEGSIFSGIVQVFVAAHKKHRLQIPAKEEDCVYYDPPLEDGKALKMPLTKQLRHIGPFHNIPAASFNIVSLITIGIWLPCYDLFLQPFLAKLTKQEEGLTSLQKIVIGNIFSVLTMVSAGLVEFRRRGLAHDARAPPMSATWMAPQYVMLGFCEVFTLVGHIQFYNSESPDKMKSVGNSLQYLVQAVSTYVGVLVMNVVDKVTRRGGKTGWLDSDIDAGRLDYYYFLIAGLGAINLVYLLFCVERYRYKVVVKVVDEEEKMLGSEDKGTKLSGFHSVSSSPWSLLCCRSGFSSTAENEPNNEKHASKNSSEISSATTMKPGGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVSASNILNIWGGVTNFLPLLGAFVSDTYVGRFRTIAFASFFSLLQQALNQCARASTSNVGVLLLGLCFLSIGSAGIRPCSIPFGVDQFDPTTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSISWTWGFAIPTVCMFCSIVMFFVGKRIYVHVKPEGSICSSIAQVLVASYRKRKVKVPSEKQVVVDGIFYDPPLTGSVVLSKLPLTKQFRVLNKAAVIMEGELNPDGSRVNQWTLVSIQQVEEVKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDRHLGPKFQIPAGSLGVISFITIGLWVPFYDRVCVPSLRRVTKHEGGITLLQRIGIGMVFSVLAMIVAGLVEKVRRDVANSNPSPLGIAPMSVMWLAPQLVLMGLCEAFNIIGLIEFFNRQFPEHMRSIANALFSCSFALANYVSSILVSSVHHATRTHSHPDWLTNDINAGRLDYFYYLLAGIGVLNLVYFLYVSQGYQYKGSVDLQDKAQDMELGSKGELDYYNAKYNEDDK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00535	67946	84973	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000535s00027362.1	PF00854.16	PTR2	111	288	4.20E-32
Glyur000535s00027362.1	PF00854.16	PTR2	310	441	5.20E-15
Glyur000535s00027362.1	PF00854.16	PTR2	649	1036	2.50E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.792
SRR1783600	control	9.855
SRR1783602	moderate drought stress	8.944
SRR1811619	moderate drought stress	8.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.952
DRR006520	Root Summer glycyrrhizin high producing strain	8.038
DRR006521	Root Winter glycyrrhizin high producing strain	13.799
DRR006522	Root Winter glycyrrhizin high producing strain	13.967
DRR006523	Root Summer glycyrrhizin low producing strain	8.741
DRR006524	Root Summer glycyrrhizin low producing strain	8.822
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.943
SRR2868004	Drought Stress (root)	34.301
SRR2967015	Control (root)	38.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.773
SRR9715740	Leaf	53.110
SRR9715741	Leaf	68.092
SRR9715739	Root	14.757
SRR9715742	Root	74.349
SRR9715743	Root	62.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.757
SRR8749028	MeJA induced 9h	1.587
SRR8749029	MeJA induced 9h	1.372
SRR8749030	Uninduced	0.705
SRR8749031	Uninduced	0.196
SRR8749032	Uninduced	0.246

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.911
SRR8400027	Control - Root	37.591