Gene detail information of Glyur000535s00027359 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27060.1 | 4.00E-97 | Regulator of chromosome condensation (RCC1) family protein |
| NR | KHN28718.1 | 4.59E-180 | Putative E3 ubiquitin-protein ligase HERC1 [Glycine soja] |
| COG | YP_001536426.1 | 5.00E-26 | chromosome condensation regulator RCC1 [Salinispora arenicola CNS-205] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 6.00E-37 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|I1J5K0|I1J5K0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G04870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00535 | 44700 | 48947 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000535s00027359.1 | PF00415.13 | RCC1 | 23 | 70 | 4.70E-12 |
| Glyur000535s00027359.1 | PF00415.13 | RCC1 | 74 | 122 | 7.20E-13 |
| Glyur000535s00027359.1 | PF00415.13 | RCC1 | 130 | 179 | 1.80E-09 |
| Glyur000535s00027359.1 | PF00415.13 | RCC1 | 282 | 333 | 6.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.509 |
| SRR1783600 | control | 8.437 |
| SRR1783602 | moderate drought stress | 10.567 |
| SRR1811619 | moderate drought stress | 10.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.999 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.317 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.330 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.240 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.044 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.907 |
| SRR2868004 | Drought Stress (root) | 10.377 |
| SRR2967015 | Control (root) | 12.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.519 |
| SRR9715740 | Leaf | 8.771 |
| SRR9715741 | Leaf | 13.561 |
| SRR9715739 | Root | 2.263 |
| SRR9715742 | Root | 5.474 |
| SRR9715743 | Root | 5.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.272 |
| SRR8749028 | MeJA induced 9h | 3.801 |
| SRR8749029 | MeJA induced 9h | 3.934 |
| SRR8749030 | Uninduced | 4.221 |
| SRR8749031 | Uninduced | 2.065 |
| SRR8749032 | Uninduced | 2.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.437 |
| SRR8400027 | Control - Root | 8.732 |