Gene detail information of Glyur000535s00027354.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01470.1 | 4.00E-36 | homeobox 1 |
| NR | XP_007157405.1 | 0 | hypothetical protein PHAVU_002G067200g [Phaseolus vulgaris] |
| Swissprot | tr|Q02283|HAT5_ARATH | 3.00E-42 | Homeobox-leucine zipper protein HAT5 |
| trEMBL | tr|Q93XA4|Q93XA4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29399.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00535 | 18541 | 20733 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000535s00027354.1 | PF00046.24 | Homeobox | 94 | 147 | 3.30E-16 |
| Glyur000535s00027354.1 | PF02183.13 | HALZ | 149 | 191 | 7.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.177 |
| SRR1783600 | control | 39.320 |
| SRR1783602 | moderate drought stress | 67.738 |
| SRR1811619 | moderate drought stress | 67.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.149 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.489 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.474 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.568 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.309 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.892 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.866 |
| SRR2868004 | Drought Stress (root) | 23.274 |
| SRR2967015 | Control (root) | 22.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.619 |
| SRR9715740 | Leaf | 31.129 |
| SRR9715741 | Leaf | 25.962 |
| SRR9715739 | Root | 5.675 |
| SRR9715742 | Root | 36.881 |
| SRR9715743 | Root | 30.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.289 |
| SRR8749028 | MeJA induced 9h | 23.736 |
| SRR8749029 | MeJA induced 9h | 6.746 |
| SRR8749030 | Uninduced | 48.897 |
| SRR8749031 | Uninduced | 5.744 |
| SRR8749032 | Uninduced | 6.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.497 |
| SRR8400027 | Control - Root | 29.048 |