Gene detail

Gene detail information of Glyur000534s00028686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38280.2	0	AMP deaminase, putative / myoadenylate deaminase, putative
NR	XP_004509928.1	0	PREDICTED: AMP deaminase-like [Cicer arietinum]
COG	YP_003262760.1	8.00E-06	adenosine deaminase [Halothiobacillus neapolitanus c2]
Swissprot	tr\|O80452\|AMPD_ARATH	0	AMP deaminase
trEMBL	tr\|I1KXP5\|I1KXP5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G40690.1}

Sequence

Transcript Sequence

>Glyur000534s00028686.1
GTGCCTTTCATCGGCAGTCCCATTTCACGCATTTCATTAGGTCGAACTTGCGCGAAGCAAAACCTTTTTCACTTTTTCTTCCTTTTTCATCTCGAGCTCTTCCGTCACTACTCACTGAGTGTGAGTGGGAGTGTTTCGTCAGTGATTCCCTCACACTCAAACTCACACACAAAGAACAACTTCAAGTTAAAGTTTGAATATTCAGAGAATCCAACACATTTTCCAGAATCACCAATATCTCTTCCTCAGTTCCTCCGATGGATCCGTCGTCTTCCACGTCGCTCCCTCCATCACTTCACCTCGCAATGGCCGCGTTGCTCGGTGCCTCTTTCATGGCCATCTCCGCCTTCTACATCCACCGCCGCTCCGTCGACCACGTCCTCCACCGCCTCGTCGAAATCCGCCGCGCACCGTCCACCACCGCCGCCACCGACGAAGCCGACTCCGACGACTACGATTACGACCATGACGACGACATGAGCGGGTTCGGCCCCGACGGAGGAGAACCGGAAACGGATGATGCCGATTTGAGAAACAACTATCCTGGAACCTTGTCGAGGTCCGTGGACGAGGCTCGGAACTTGCTTCGTAGCTATAGGATTTCGTCTTCGATGCCGAACGTTGTTTCCGCAGCGGAATGGTTCCGAGAGGACCCTACGAACCGTGCGTCGTCGCTCGATAATCTCAATTCCGTTCCGTTAGGACATCCGTCTCTTCAAATGGGTTCAACGAATGGAGAGAGTGCTCAGATTTCGTGTTCCTACAAGAGGATAGCGTCTGTTGGTAGAATTATGACCCCGAGATCACCGGGACGTAACGCGTTTAATAATGCTGAGGATTCTGATGAGGAGGAAACGCAGCTTGGTGATGATAGTCGCATACCTTTCTACCCTGGGACTAGACACGGACTAAATCCAACGGTTCCATTCAGAGTTGATGATGTAAACTCTGCAAAAAATCAGATGTATGGAGAGGTTTCCAAAGAAGAAAGAGCTGGTGCAGATATGAACTGTGGTGGAGTGATAGATTCAACTTCAGCAAATGTAGCTGGGAATGACATTGTGTTTGTCAATAATGTTTTGCCTGCAAGAAGCACAGCTCATGAACCAATGAATATAGAAGAAGAGGAAGTATGCAAGATGATTCGGGAATGCTTAGATTTGCGCAAGAAATATGTTTACAAGGAAAATGTTGTTCCATGGAAGGCTGAACCTGTGGAAACTAACTCTGATCCATTTCACTTTGAACCAGTTGAGGCAACAGCACACCACTTTAGGATGGAAGATGGAGTAATACATGTTTATGCAAGTAAAACTGACACCGAAGAGCTATTCCCTGTTGCAAGTTCCACGAGATTTTTTACTGATATGCATTACATTCTTAAAGTTATGTCTATTGGGAATGTTCGCTCTGCATGCTACCACAGGCTAAGGTTTCTCGAGGAAAAATTCCGCCTTCATCTGTTACTGAATGCAGATGGGGAGTTTCTGGCCCAGAAGAGTGCACCACACCGAGATTTTTACAATATCCGAAAAGTTGATACTCATATTCATCATTCTGCTTGCATGAATCAGAAGCATCTCCTCCGCTTCATCAAGTCAAAATTAAGAAAAGAACCCGATGAGGTTGTTATATTTAGAGATGGAAAGTATATGACACTGAAGGAGGTGTTTGAGAGTTTGGATTTGACCGGATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTTCATAGATTTGATAAATTCAACCTAAAGTATAATCCTTGTGGACAGAGCAGACTCAGAGAGATATTTTTAAAGCAGGATAATCTTATCCAGGGAAGGTTTTTGGCTGAAGTAACAAAACAAGTTTTGTCCGATCTTGAAGCAAGCAAATATCAGATGGCTGAGTACAGGATCTCTGTTTATGGAAGAAAACAGAGTGAATGGGATCAGTTGGCAAGTTGGTTTGTTAACAATGCTCTCTATAGTAAGAATGCCGTATGGCTAATCCAGTTACCACGGCTATATAATGTGTACAAGAATATGGGAATTGTTACCTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGCCACAATAGATCCAAACTCTCATCCTCAATTACATTTGTTTCTCATGCAGGTGGTGGGATTTGATCTTGTAGATGATGAAAGTAAACCTGAAAGGCGTCCAACTAAGCACATGCGTACTCCAGCTGAGTGGACAAATGAATTCAATCCAGCATACTCTTATTACCTCTATTACTGCTATGCAAACTTGTACACGCTCAACAAGCTGCGGGAATCTAAAGGAATGACAACAATAAAGTTGCGGCCTCATTGTGGAGAGGCAGGCGAGAGTGATCATTTAGCTGCTGCCTTCCTCCTATGCCATAACATCTCTCATGGGATTAATCTAAGGAAGACTCCTTGTTTGCAATATTTATATTACCTTGCGCAGGTTGGATTAGCCATGTCACCGCTTAGCAATAATTCCCTTTTCTTGGACTATCATCGCAACCCCTTGCCCATGTTTTTCCAGAGAGGTCTGAATGTGTCTCTCTCTACTGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCATTGCTAGAAGAATATAGCGTTGCAGCAAAGGTATGGAAACTNTCTCCCTGTGACCTGTGTGAGATTGCTAGAAATTCTGTATACCAATCCGGATTTTCACATCNAGCCAAGTTACACTGGCTCGGGGATAAATATTTCTTGAGAGGTTCTGAAGGAAATGATATTCACAAGACAAATGTTCCCAATTTGAGGATCTCTTTCCGATATGAGACATGGAAGGATGAAATGCAATATATTTACGCTGGTCAAGCCACCTTTCCTGAAGATGTTGACCCATGAAGCAAGCCAAATGAAATTCACCGTTCATCCATCCTNTGATTTATGACGCTAACGTCTATTCCTTTTAAGCTATGCCACAATTATGTTTTAACATAATTGTCAACAAGCTAAAGACATGTTCTCTTGCCAAAGCCTTGCTTCATATTGGCCCTCAATAAAATAAGGATAAAGAAATTAATGTTGGTAAGCACTGGCATCTGCACTCCTACTTTTACGTGGGACGAACACTTTTGTTATTTATTAGAAGTAATCAGTAGGTAGTTAATCTATACCTTCCATTTGGTGTCCAAATTTCTTACCTATTTTGCCCTTGTATAATTTAATGTTTTGATTAAAATTGAGGGGTCAAAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00534	136506	145988	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01490	AMPD	EC:3.5.4.6	Purine metabolism	map00230

Gene Ontology

biological_process

GO:0009168 purine ribonucleoside monophosphate biosynthetic process

GO:0032264 IMP salvage

molecular_function

GO:0003876 AMP deaminase activity

GO:0019239 deaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000534s00028686.1	PF00962.17	A_deaminase	423	828	1.60E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.497
SRR1783600	control	16.511
SRR1783602	moderate drought stress	24.310
SRR1811619	moderate drought stress	24.163

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.894
DRR006520	Root Summer glycyrrhizin high producing strain	13.643
DRR006521	Root Winter glycyrrhizin high producing strain	12.518
DRR006522	Root Winter glycyrrhizin high producing strain	12.333
DRR006523	Root Summer glycyrrhizin low producing strain	9.162
DRR006524	Root Summer glycyrrhizin low producing strain	9.377
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.472
SRR2868004	Drought Stress (root)	13.885
SRR2967015	Control (root)	14.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.446
SRR9715740	Leaf	6.218
SRR9715741	Leaf	8.239
SRR9715739	Root	2.734
SRR9715742	Root	14.486
SRR9715743	Root	12.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.139
SRR8749028	MeJA induced 9h	33.339
SRR8749029	MeJA induced 9h	12.732
SRR8749030	Uninduced	3.138
SRR8749031	Uninduced	1.968
SRR8749032	Uninduced	3.640

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.314
SRR8400027	Control - Root	25.298