Gene detail information of Glyur000534s00028683 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01390.2 | 6.00E-71 | DNAJ heat shock family protein |
| NR | XP_003551993.1 | 4.44E-162 | PREDICTED: dnaJ homolog subfamily B member 4-like [Glycine max] |
| COG | YP_002461533.1 | 2.00E-36 | chaperone DnaJ domain-containing protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9LZK5|DNJ19_ARATH | 2.00E-40 | DnaJ protein ERDJ3B (Precursor) |
| trEMBL | tr|I1N198|I1N198_SOYBN | 2.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G16720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00534 | 123992 | 127583 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000534s00028683.1 | PF00226.26 | DnaJ | 5 | 75 | 2.90E-26 |
| Glyur000534s00028683.1 | PF01556.13 | CTDII | 208 | 285 | 1.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.403 |
| SRR1783600 | control | 29.741 |
| SRR1783602 | moderate drought stress | 35.525 |
| SRR1811619 | moderate drought stress | 35.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.943 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 32.580 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.510 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.739 |
| SRR2868004 | Drought Stress (root) | 14.038 |
| SRR2967015 | Control (root) | 13.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.102 |
| SRR9715740 | Leaf | 16.095 |
| SRR9715741 | Leaf | 16.980 |
| SRR9715739 | Root | 2.680 |
| SRR9715742 | Root | 9.846 |
| SRR9715743 | Root | 6.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.202 |
| SRR8749028 | MeJA induced 9h | 16.544 |
| SRR8749029 | MeJA induced 9h | 14.370 |
| SRR8749030 | Uninduced | 14.755 |
| SRR8749031 | Uninduced | 3.249 |
| SRR8749032 | Uninduced | 5.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.746 |
| SRR8400027 | Control - Root | 10.866 |