Gene detail

Gene detail information of Glyur000533s00015057

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43420.1	2.00E-147	3-beta hydroxysteroid dehydrogenase/isomerase family protein
NR	XP_003540692.1	0	PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like isoform X1 [Glycine max]
COG	YP_002604520.1	3.00E-40	3-beta hydroxysteroid dehydrogenase/isomerase family protein [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|A9X4U2\|HSDD3_ARATH	0	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3
trEMBL	tr\|K7LT52\|K7LT52_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05480.2}

Sequence

Transcript Sequence

>Glyur000533s00015057.1
CCCCACTCTCTCTCGACTCTCAGTGCGATTTGCATTACATACATAGCAACAGTTTCCGCGCCAAAGGAAAGGAAAGAGAATAAGGAGTGGTTAGTCGCAGCAGCAATGGCGGTGGACGACGATCGGTTCGCCGAATTGAACCCTAAGAGGTGCGTCGTTTTAGGCGGCAGAGGATTCCTCGGGAGATCGCTGGTCCTGAGGCTGCTGAAACTCGGCAACTGGATCGTCCGAGTCGCCGATTCCGCTCAGTCCCTCCAACTTCACAACTCCGAGTCTCTCCTCGCCGAAGCTCTCGCCTCTGCTCGCGCCTCTTACTTCCACCTCGACCTTCGCGACAAGCACAACATCATCAAAGTTCTAGAAGGTTCTTCCGTCGTCTTTTATATGGATGTCGCTGGCTCCAATGCGAACGACTTCTACAGTTGCTACAAGCTTATAGTTCAAGGTGCAAAGAATGTGATTAGTGCTTGCCGAGAATGCAGAGTGAAACGCCTGATATACAACAGTTCTGCAGATGTTGTATTTGATGGTCTGCATGATATACATAATGGAGATGAATCGTTGGCATATCCGTGGAAAATAGACAACATGTTAAGTGACCTTAAGGCTCAAGCAGAAGCATTGATCCTGAGTGCCAATGACATTGATGGCGTGTTGACATGCTCACTTCGNCCGAGTATTGTTTTTGGACCTGGTGACTCAGAATTTGTGCCATATTTTCTAAAGTTAGCAAGATGTGGCTTCGCAAAGTTTATTATAGGGACTGGTGATAATCTGTCAGACTTCACCTTTTCTCAGAATGTTGCTCATGCCCATATCTGTGCAGAAGAAGCCTTAAATTTCCAAACAGTTACTGTGGCTGGAAAGGCATTTTTTATCACAAATCTTGAGCCTATGAAGTTCTGGGAATTTCTCTCACTTTTATTGGAAGGTCTTGGATATCAAAGGCCATTCATCAAACTTCCTGCCAATTTAGTACAATACATTATCTCGGTTTTAAAGAGGTTACATGAAAAGTTGGGACCCAGATACTTCAGTTATCCTTTNTTATTAGCTTTACACACCCGAACTTTCAATTGCACAGCAGCTCAAAAAGATATTGGATACTCACCAATAGTCTCCCTTGAGGAAGGTGTCACATTAACCATAGAATCATTCTCTCATTTAGCCCGAGATTCATCCCTTTCAAGATGCTGCAGTTCTGTTGAACAGTCAAAAGCAGATAAGCTGCTTGGTGGTGGAAAAGTGGCTGACGTTTTGTTGTGGAGAGACGAGAAGACATCCTTTGCATATTTCCTCGGGCTGGTTTTTTTGTTTTATTGGTTTTTCCTTTCTGGAAGCACGTTTATATCATCTGCTGCGAGGCTTTTGCTGCTTGCCACTTTACTTCTCTGCGGACATGGTGTTTTGCCATCAAAGCTACTTGGTCTCCATATACAGAGGGTTCCAGTGTCTAATTTTGAGATCTCTGATACGGTAGTGAAAGATTCAGTTGCAACTACAGTACATATATGGAACAGGGGTTTTCAAAATATAAAAGGACTGGCGCAAGGGGACGATTGGTCTACATTCTTCAAGGTTGCAGTGATTCTTTACCTTCTGAAGTTGATCCTGTCTCAGTTTTTGACAACATTTATGGCCATAGGTCTAGTCTTCGCATTTATGGCATTTTTTGTTTACGAGCAATATGAATCAGAAATTGATGGATTAGTGGATATTCTGTTCAATAGTTTGAAGGAGTTCACGATGTATTTGATGGGAATTTTACCTGTTTCTGTATCGCGGCTTCTGCATTATCATGACAACTTTCAGCGTTACAATGGACCAGGATGCGTGAAAGAGCTGAGATAGTCAAACAAAAGTTTCAGCTTAGCTCTGCAATCTTCGAGCTTCCATGAGGCTATATATTACACACAAACACGAAGTTGTGTCACCATGAAAAAGATAGGGAAGATATAATCACCATTCNAAGAATGCCCTTAATTTCTTCCTCGTTCTATCTTCTGTAATCACAATTGATGAATTGCACTAGTGAGTTGGGCTGAAGATTTTGCGGTTTGAAATTATTGTGGTGCTGTGTTTTAACGGATGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00533	137930	144493	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07748	E1.1.1.170, NSDHL, ERG26	EC:1.1.1.170	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000533s00015057.1	PF01073.14	3Beta_HSD	17	287	9.00E-70
Glyur000533s00015057.1	PF02453.12	Reticulon	381	539	7.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.495
SRR1783600	control	10.362
SRR1783602	moderate drought stress	7.331
SRR1811619	moderate drought stress	7.362

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.285
DRR006520	Root Summer glycyrrhizin high producing strain	9.222
DRR006521	Root Winter glycyrrhizin high producing strain	8.671
DRR006522	Root Winter glycyrrhizin high producing strain	8.444
DRR006523	Root Summer glycyrrhizin low producing strain	7.596
DRR006524	Root Summer glycyrrhizin low producing strain	7.896
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.761

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.709
SRR2868004	Drought Stress (root)	20.943
SRR2967015	Control (root)	19.223

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.915
SRR9715740	Leaf	3.915
SRR9715741	Leaf	5.121
SRR9715739	Root	3.181
SRR9715742	Root	7.610
SRR9715743	Root	6.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.590
SRR8749028	MeJA induced 9h	12.309
SRR8749029	MeJA induced 9h	9.233
SRR8749030	Uninduced	5.312
SRR8749031	Uninduced	5.111
SRR8749032	Uninduced	4.194

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.969
SRR8400027	Control - Root	18.313