Gene detail information of Glyur000533s00015054.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06110.1 | 1.00E-145 | SKP1/ASK-interacting protein 16 |
| NR | KHN06196.1 | 0 | F-box protein SKIP16 [Glycine soja] |
| COG | YP_008151730.1 | 6.00E-14 | magnesium transporter ApaG [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9LND7|SKI16_ARATH | 1.00E-179 | F-box protein SKIP16 |
| trEMBL | tr|I1LJN6|I1LJN6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G13500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00533 | 117826 | 122356 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000533s00015054.1 | PF12937.2 | F-box-like | 13 | 49 | 1.90E-07 |
| Glyur000533s00015054.1 | PF04379.9 | DUF525 | 325 | 416 | 3.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.390 |
| SRR1783600 | control | 50.523 |
| SRR1783602 | moderate drought stress | 39.424 |
| SRR1811619 | moderate drought stress | 38.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.028 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.728 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.756 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.183 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.109 |
| SRR2868004 | Drought Stress (root) | 65.595 |
| SRR2967015 | Control (root) | 62.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.444 |
| SRR9715740 | Leaf | 9.064 |
| SRR9715741 | Leaf | 8.830 |
| SRR9715739 | Root | 27.043 |
| SRR9715742 | Root | 24.853 |
| SRR9715743 | Root | 24.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.749 |
| SRR8749028 | MeJA induced 9h | 41.972 |
| SRR8749029 | MeJA induced 9h | 53.657 |
| SRR8749030 | Uninduced | 36.365 |
| SRR8749031 | Uninduced | 48.559 |
| SRR8749032 | Uninduced | 40.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.695 |
| SRR8400027 | Control - Root | 49.517 |