Gene detail

Gene detail information of Glyur000533s00015049.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06040.1	2.00E-79	B-box zinc finger family protein
NR	AFK36096.1	9.69E-156	unknown [Lotus japonicus]
Swissprot	tr\|Q96288\|BBX24_ARATH	2.00E-100	B-box zinc finger protein 24 {ECO:0000303\|PubMed:19920209}
trEMBL	tr\|I3S754\|I3S754_LOTJA	4.00E-156	Uncharacterized protein {ECO:0000313\|EMBL:AFK36096.1}

Sequence

Transcript Sequence

>Glyur000533s00015049.1
TCCAGTCACTTCATTTTCCATGGCCCAAATAACATTCATTACCTACTAGCTAGCACCACCATCAACTTGTCCTCCTAAATCCATCCTAATCTCTCTTATCTACCCATATTCTTGCCCCTTTTTTAGTTTTTGGTCGTGTGAAAGAACTAAAAGGGTTGGGAGTTGTTGGATATATCTCCCAGTTTTCAGTGAAGACCAAGTTGCAAGAAGAAGAAGAAGAAGATGAAAATCCAGTGTGATGTGTGTGAGAAGGCTCCAGCAACGGTGATATGTTGTGCGGATGAGGCGGCTCTGTGTGCCAAGTGTGACGTTGAGGTTCATGCTGCTAACAAGCTTGCAAGCAAGCACCAGAGGCTCCACCTTCAATGTCTTTCCAACAAGCTTCCCAGATGTGACATCTGCCAAGATAAGGCTGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTAAGGATTGTGATGAATCAATTCATTTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTCCTCGCTACCGGTATCCGTGTGGCTTTGGGCTCTAATTGCACCAAAGACAATGAGAAAATCCAAGCAGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGACAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGAATTAACAGACTTTGCATCATCACCAGACAAAAAGCAATCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGACACAGGTCTTTTCAGTGATCAGTTTCCCCAGGAAGGTTTAGCTGCGGCTGAAGTTCCTCAACTTCCAGTAACACACACTAGCAGTGTTGCCTCATACAAAGCCCCCAAATCCTACATGTCTTACAAAAAGCCAAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTTCACTGTGCCTGATCTTGGCTAAATTGCCCTTGGTTATCTGGACTATTGCGCATGAATCTGTAGATTGATGAGTTATTATATATATATTTATGCATACTTCTCTCTAAAGATACTGTGAGTATAGAAGTAAGTTAACTAGCTGTGTGGAGTTTATAAACATCACATTTTCAGGAGCTTGGAACCATTCGATGTTCAGAATGGCATATAGAATTATACCTTGGGGTATTAAATTTTGCATGGTGTTTGTGATCATTGTTTATAACCTAGTGGTGCTCACACCCTCCATGCAAAATTGGGTGGTTAATGAATGTTATGTGTATGGTTGTTTTGAAGACCATGGGCGTGTGGTTAACGTGTTTGAAAATGTTAGTCGACCAAAAAAAAATGATAAATATTAGTAATTAATATGTTATGTTAGTAAGGGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00533	94886	97874	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000533s00015049.1	PF00643.19	zf-B_box	53	86	7.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.299
SRR1783600	control	39.521
SRR1783602	moderate drought stress	45.746
SRR1811619	moderate drought stress	45.256

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.815
DRR006520	Root Summer glycyrrhizin high producing strain	28.474
DRR006521	Root Winter glycyrrhizin high producing strain	79.909
DRR006522	Root Winter glycyrrhizin high producing strain	77.853
DRR006523	Root Summer glycyrrhizin low producing strain	29.678
DRR006524	Root Summer glycyrrhizin low producing strain	30.333
DRR006525	Leaf Summer glycyrrhizin high producing strain	214.649
DRR006526	Leaf Summer glycyrrhizin high producing strain	214.569

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.301
SRR2868004	Drought Stress (root)	47.764
SRR2967015	Control (root)	44.776

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	214.288
SRR9715740	Leaf	320.180
SRR9715741	Leaf	228.298
SRR9715739	Root	34.651
SRR9715742	Root	49.590
SRR9715743	Root	43.566

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.848
SRR8749028	MeJA induced 9h	50.594
SRR8749029	MeJA induced 9h	68.684
SRR8749030	Uninduced	36.613
SRR8749031	Uninduced	28.737
SRR8749032	Uninduced	22.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.867
SRR8400027	Control - Root	35.091