Gene detail

Gene detail information of Glyur000533s00015045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28480.1	1.00E-83	RNA-binding CRS1 / YhbY (CRM) domain protein
NR	XP_003540695.1	0	PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Swissprot	tr\|Q67XL4\|Y3544_ARATH	3.00E-47	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBL	tr\|I1LQD8\|I1LQD8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05590.1}

Sequence

Transcript Sequence

>Glyur000533s00015045.1
CGTCTTTATTGAAATGGNTACTGGCCCGTAAGATTAGCACCCGGGCTTTAACCCACCCGATCCAATAGGGGTGGTGCACCTGAAGAACAACAACAACACAACACACTGCACAAAGAAAGGGGATTCTTCTTCTTCTTCTCCAACATTAACAATGGCAACTTCCTCGCTGTTCCGCAGTATTCGGAGAGCTTCCTCTGTTCTCAAATCCTCGTATGCTATTTCTACCTCGTTTTCGATCTCTCCCAGGTCAGTTGGGAGGACCCAAATATCTATTTGTTATCCATTCAGGCACTGTGTCCTGCTTGCGAAGCAAGGTTCTTGTTGGTTGGGTTTCAGAGAGTTGAGTTATGGCACGGTTAATCTTGTGATTACGGGAGGGAAGACGAAGTTTGAGACTCAGGAGGTTGAGCCTCCAAGGAAAGACAAGTGGAAGACTAAGAAGAGGCTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCGGCAAATAGGAGAGATCCTCGTCGACTTGGTGTCAAAGGGAAGAAGAAGAAGCAGAAGTTTGCCAATCCGGAAGAGAGAATTAAGTACAAGATTGAAAAAGCCAGAATCAAAGAAGCGTTGCTCATTGAAAGGCTCAAACGATATGAAGTTCCTAAACTTCAGGGTCCTGTTGTAAAACCAGATGGCTTGACAGGCGAGGAACGGTTTTATTTGAAGAAAATGGCTCAGAAGAGGACTAATTATGTACAAGTTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCATATGCAAGCCTTGCAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCAATTCAGATAATAGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGAACAGCCCGAGGTTATGTCACCAATAGATACATTATCCAAGAAAAAGGCACTTGAAAAATCAAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATCGCTATCGCTGAGAAAGAATTAGAGCTATATCACAGGCATGTTGCCCTTTATGGAGACCCTAACAACCGTAATCCCTTGTCCATCCTTGAAGGTCCAAGTGGAAATTCCAGGGAAGAAGGGAATCATGGTGAAGAAGACCTTCATTTGAGTAGTGATGGTTTTTCGGCCGAGACAGAAGCAGATTCCACAGAGATGGAGCTATCAGAAACTGAAGATGATTTCAAAGATGGAAACTTGTCAATGAATGAATCAGGTTCTGAAGAGGAGGACAGAATGTTGGATTCTGATGAGGATCAAGGAAGAGAAGTATATTTTACTAAAATGAAAGATGAAAGTGTATGCTCGATCAAGGGTTCATCATCAATGTCTAAACATGGCCACCATTATAATAATCAATATTTGTTATCCGAACAAATTCCCATCACTAGAGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00533	80772	83937	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000533s00015045.1	PF01985.16	CRS1_YhbY	175	259	1.90E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.073
SRR1783600	control	3.019
SRR1783602	moderate drought stress	6.497
SRR1811619	moderate drought stress	6.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.056
DRR006520	Root Summer glycyrrhizin high producing strain	5.161
DRR006521	Root Winter glycyrrhizin high producing strain	7.391
DRR006522	Root Winter glycyrrhizin high producing strain	7.505
DRR006523	Root Summer glycyrrhizin low producing strain	8.134
DRR006524	Root Summer glycyrrhizin low producing strain	7.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.824
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.697

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.747
SRR2868004	Drought Stress (root)	5.359
SRR2967015	Control (root)	5.173

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.217
SRR9715740	Leaf	4.104
SRR9715741	Leaf	2.869
SRR9715739	Root	0.015
SRR9715742	Root	1.183
SRR9715743	Root	1.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.609
SRR8749028	MeJA induced 9h	3.419
SRR8749029	MeJA induced 9h	4.198
SRR8749030	Uninduced	1.609
SRR8749031	Uninduced	1.260
SRR8749032	Uninduced	0.825

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.108
SRR8400027	Control - Root	5.278