Gene detail

Gene detail information of Glyur000533s00015044.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59470.2	8.00E-75	Far-red impaired responsive (FAR1) family protein
NR	XP_007150433.1	3.79E-137	hypothetical protein PHAVU_005G153200g [Phaseolus vulgaris]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	2.00E-23	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|V7BWP3\|V7BWP3_PHAVU	1.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:ESW22427.1}

Sequence

Transcript Sequence

>Glyur000533s00015044.1
CTGGGAGAGATCGAAAACGAGGTAGAAATAGCATACGAGGATTTGAGAACAGAGGAAGCTCTCCGAATACTGCGGAACAGCGAGGAAGTTGCCATTGTTAATGTTGGAGAAGAAGAAGAAGAATCCCCTTTCTTTGTGCAGTGTGTTGTGTTGTTGTTGTTCTTCAGGTGCACCACCCCTATTGGATCGGAACTTATTGTAAACCATATTTTCCTCATTGCATTCCCCTCTGCTAATCTTTTTGTTGCTGCAGTGGAGTTTGGCATTGATGGCTCTGTTAACGGTGAGATAGTAGGGAATGCTGCCATGGGTGAGGTTGGTAGCATAGCTGATGAAAACAGAGAAGGAGGAAGTTCTGCTGAACCAACTTCCGAACCAGACCAAGATGATAATGTGAATCGAGATTCTTCTGGAGGGGTTATAATACCNTCAGCAGTTCCCACAGTATCAGATGATTCTGTTGATGAGCCCTATATAGGTCAGGAGTTTGATACGGAAGCAGCAGCACATGCATTTTATAATGCATATGCCGAACAAGTTGGATTCATCATACGTGTAAGCAAACTCTCACGATCNAGGAAAGATGGATCTCCTATTGGGCGGGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGTGAAAAGATTGTAAGGCAAAGGGCTGAGACAAGGGTTGGTTGCAGNGCAATGATTTTGGTGAGGAAAGTTAGTTCTGGTAAATGGGTTGTTTCAAAGTTTATAAAGGAGCACACACATCCTCTGAATCCTGGAAGAGGTAGACAGAGTTGCATTTATGATCAACCTCCGATTGACCATGATAAAATTCGGGAACTATCTCAGCAGTTGGCGATAGAGAAAAAGCGATCAGCGACTTACAAAAGACATATTGAATTGATATTTGATTACATCGAGGAGCACAATGAGACCCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAAGGAGATGGAAACCCCAAGAACAACNTAGTCATTGATAGGTTCAACTTTCAATTATCTAGTCTTTTTACTTATCATTCACTTCAGTGTCCAAAAGTGCTGCTAGATGAAGTGTGCAATAATATCTTATAACTGCTGACCTAGGTTTCTGCTTTGTTCCTGCTTGTCTGGTGGGTTTGGTAGTTCAAGTTTGATACAATGGAATTCATTGTATTGCTTTTAATGCTGTAATATTTTTAGTTTGTAGAAGAAACTAGTTCAATCAATGTATAGGTCCTTTGAGTCCATTCTTGTGAAGTTGCTAGTCGCTAACAATGTGATAACCCATAAAAAGGCTTTCAGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00533	77353	81017	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000533s00015044.1	PF03101.10	FAR1	172	259	9.60E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.692
SRR1783600	control	7.851
SRR1783602	moderate drought stress	9.043
SRR1811619	moderate drought stress	9.043

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.715
DRR006520	Root Summer glycyrrhizin high producing strain	21.015
DRR006521	Root Winter glycyrrhizin high producing strain	20.782
DRR006522	Root Winter glycyrrhizin high producing strain	19.790
DRR006523	Root Summer glycyrrhizin low producing strain	20.967
DRR006524	Root Summer glycyrrhizin low producing strain	20.958
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.505

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.455
SRR2868004	Drought Stress (root)	25.116
SRR2967015	Control (root)	25.949

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.643
SRR9715740	Leaf	27.471
SRR9715741	Leaf	29.822
SRR9715739	Root	3.204
SRR9715742	Root	11.941
SRR9715743	Root	11.252

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.156
SRR8749028	MeJA induced 9h	22.118
SRR8749029	MeJA induced 9h	27.495
SRR8749030	Uninduced	21.242
SRR8749031	Uninduced	41.139
SRR8749032	Uninduced	21.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.844
SRR8400027	Control - Root	19.216