Gene detail

Gene detail information of Glyur000533s00015038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59410.1	0	protein kinase family protein
NR	XP_004507335.1	0	PREDICTED: probable serine/threonine-protein kinase GCN2-like [Cicer arietinum]
COG	YP_004981777.1	3.00E-23	Serine/threonine protein kinase with PASTA sensors [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|Q9LX30\|GCN2_ARATH	0	Probable serine/threonine-protein kinase GCN2
trEMBL	tr\|A0A072UKV1\|A0A072UKV1_MEDTR	0	Serine/Threonine-kinase GCN2-like protein, putative {ECO:0000313\|EMBL:KEH30322.1}

Sequence

Transcript Sequence

>Glyur000533s00015038.1
ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGAGGAGGCGGGCGCAGAAGCAAAGGAAGAGCACCTTCCAAAGATGGAGCTTCTCAGTTCGGCGCCGATGATGATAACGACCAACTCTCCGAGGAGATTACCGCANTATGTGCAATTTTCCAAGAGGACTGCAAAATTCTTCCCAGATCTCCTCCTCAAATAGTTTTGAAGCTCAGGCCCTACTCGAAGGACATGGGTTATGAGGATGTTGATGTTTCTGCTGTTCTTGTTGTCAGGTGCTTGCCTGGGTATCCCTTCAAGTGCCCCAAGTTGCAGATTACTCCNGAGAAGGGTTTATCAGAAACTGATGCTAATAAACTTTTGTCTCTCCTCAATGATCAGGCTAATTTAAATGCCAGGGAGGGACGAGTAATGATCTTTAATTTAGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCTATTGCCAAATCAACTGAATCTAAGCTTTTGCATTCAACTACAGAAGGCAATAAAGAATTGTGTCCCAAGGATATGGCATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCATTGACCTTTTCAGTGGCTATGGAGAGTCCTGGAGTTGGGGTTTTGGAATAGATGAATCTGCTGGAAAAAGTTATTCTCTTCCTCACTCTAAGTTAGAAGCCTCCAAGCCACGTTTTGAAACCCGGGAAAAGAAATTTGATAGTAAGGAAAAACAGTTAATAATGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGCAACAATAGCTTATCTTTGACTCAATCAAGTAGATCTCTGGTCGAGGATTTTGTAGGGAACAACAATGAAGGTGAGAAAGAGTATTTTATCGTTGATGAGTGTACAACAGAAGACAGCGAAGGCATGTATGACAGCGAGTCTTCAGAGTCTCTGTCTTCTGCTTCCTTGGCTCATAACCAAGCATCTCAAACAATAGAAAAGGATCTAGTAATGGTTCACATGCTTCGCNTTGTTTGTGCTTCTAAAGGAACATTGGCTGATTCTTTGCCACAATTAGCAACAGAGCTGTACAACTTAGGGATCTTTTCTGACCTGGCACGTGATATGGCATCTAAACCGCCTTCCCTTTTTAACAAAACCTTTGACCGTGTCTTCCAGAAACACCTGGCATCATCCATAATATCTCCATTTTGGAAACCTTCTCCTGATCTTGGAGGCTCTAATACAGTTCCCCATAGTTCTCGCTATTTGAATGATTTTGAGGAGCTACGCCCTCTTGGTCATGGTGGTTTTGGTCATGTTGTGTTGTGCAAAAATAAGCTTGATGGAAGGCAGTATGCAGTAAAGAAAATCCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTTGTGCGNTATTATCAGGCATGGTTTGAAACTGGAGTTGCAGATTCTTATGGTGATCCTGCTTGGGGTTCAAGGACTCCNGTAAGCTCTACTTTCAGCTATAAAGCTGCAAGCTCCAATGATGCCATTGGGCNTGAGAATCAGCTTGAATCAACGTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTNGCCAGGTGTTTGAATCATATACTCATTTTGACAAAGAATTGGCATGGCATTTGTTTCGCCAAATTGTGGAAGGTTTGGCACACATACATGGGCAAGGAATAATTCACCGGGATTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTTTAGCCAAGTTCTTGAAGTTGGAGCAGCTAGATCAAGATCTAGGCCATCCTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGGGTGGTTTTCTTTGAGCTTTGGCACCCGTTTGGGACAGCAATGGAGAGACATGTTGTTTTGTCTGATCTGAAACAGAAAGGGGAGGTTCCATCTGTATGGGTTGCTGAGTTTCCAGAACAGGAGTCCTTGCTGCGGCGGTTAATGTCTCCAGGTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCGGAATGCATTTCCTCCGCGAATGGAGTCCGAAGATGTTAAGCACAAAACACATTCGTCAGATGTCAACAGGGAAATTTTCAGACAACATTGTGCAAAACACCTAGAAATATCACCAATGCGATTATTGGATGATTGTCAACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCACGAGCTGCGTTTGCCTTTTGTGAACTGGATTATATCTAACCAGAAATCTTCGTTCAAACGATACGAGATATCATATGTTTACAGAAGAGCAGTTGGACATTCATCTCCAAACCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAGGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGAAGACTCATGTGACATTCATCTAAACCATGCTGACCTCCTCGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACACAGAATTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCTTCAGAAAGGAAATCAATATGGGTAGTGCTTAGGCGGCAGCTTTTGCAGGAACTGGATTTGGTAGAAGCTGTGGTAAATAGGTTGCAGACAGTAGGTTTGAGATTCTGTGGATCTGCAGATCAGGCACTTCCCAGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGCACTTGATGAATTGTCTGAGCTTGTCAGTCTCTTGAGAATATGGAGGATTGACAAAAATGTATACTTAAGGAAGGAGAATAGTTCTGGATCACTCTCTGAAGGTGTCTTGCTAGCGGTTGGTGGTCGATATGACTATTTGCTTCAACAGCTGTGGAGGAGTGACTACAAAGGAAATCCTCCCATTGGTGTGGGGACTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATTTTAAGCCCAATAGAAATGAAGCCAGCACCAATATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGTTGGTAGAGCGCATGGAACTAGTTGCTGAATTATGGCAGGAGAACTTTAAGGCCGAATTTGTTCCCATCCCTGATCCAAGTCTTACAGAACAGTATGAGTATGCTAATGAACATGATATCAAATGTCTCGTCATTATTACAGATACAGATTTCTTCCTGACAGATTCTGTTAAGGTTCGACACCTTGAACTTAATAAGAAGGAGAAAAATGTTGAGAGAAAAAACCTAGTCAAGTTTCTATCGGATGCTATGGCAACTCAATTTAGAAACCCCTCCATTTGGATTTGATGGGATGTTCTTTGAAGCTCAACTGTTTTGCCTTCAAACATTAATAGATGATGGAGTCGTTTTTGGTTCATATCGTATATCAATGGTTATGTTTCATCCAGCAGCTGAACAATAGGGTCTGAGAGGAACCAGATTATCAAAATGATGCTGATGCCCCTTCCATTTTTCAAAAATATAGTAGAGAATACATATACATCAGTTTTGCAGCTTTTTCCTAAATTTCTTGCTATATTTTAGGTTTTCTGTGCATAGTTGTGAAAATGTAAAATTGTAAATATGTATNAAGTTTAAGAATTGTTTTGATTCGTTTAACCGGATAAAATGGCCATTGAGCTGTTGAAATTGTATTCTATTTTTTCCCCCATCTTTTTACATTGCATTCGAGTATTTACCTTTTAACCTTTGTTTGGAT

Protein Sequence

>Glyur000533s00015038.1
MGHSSKKKKRGGGGRRSKGRAPSKDGASQFGADDDNDQLSEEITAXCAIFQEDCKILPRSPPQIVLKLRPYSKDMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPEKGLSETDANKLLSLLNDQANLNAREGRVMIFNLVEAAQEFLSGIEPIAKSTESKLLHSTTEGNKELCPKDMASSNKNRSFVYGFIDLFSGYGESWSWGFGIDESAGKSYSLPHSKLEASKPRFETREKKFDSKEKQLIMQELPAKLDTVGEVSEDSNNSLSLTQSSRSLVEDFVGNNNEGEKEYFIVDECTTEDSEGMYDSESSESLSSASLAHNQASQTIEKDLVMVHMLRXVCASKGTLADSLPQLATELYNLGIFSDLARDMASKPPSLFNKTFDRVFQKHLASSIISPFWKPSPDLGGSNTVPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVADSYGDPAWGSRTPVSSTFSYKAASSNDAIGXENQLESTYLYIQMEYCPRTLXQVFESYTHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPSVWVAEFPEQESLLRRLMSPGPSDRPSATELLRNAFPPRMESEDVKHKTHSSDVNREIFRQHCAKHLEISPMRLLDDCQQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISYVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHEDSCDIHLNHADLLDAIWSWIGVKVEHRIKVAELLSMMGSLRPQSSERKSIWVVLRRQLLQELDLVEAVVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDKNVYLRKENSSGSLSEGVLLAVGGRYDYLLQQLWRSDYKGNPPIGVGTSLALETIIQNCPVDFKPNRNEASTNILVCSRGGGGLLVERMELVAELWQENFKAEFVPIPDPSLTEQYEYANEHDIKCLVIITDTDFFLTDSVKVRHLELNKKEKNVERKNLVKFLSDAMATQFRNPSIWI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00533	42485	58497	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16196	EIF2AK4	EC:2.7.11.1	Protein processing in endoplasmic reticulum	map04141
			Protein processing in endoplasmic reticulum	map04141
			Protein processing in endoplasmic reticulum	map04141
			Autophagy - animal	map04140
			Autophagy - animal	map04140
			Autophagy - animal	map04140
			Autophagy - yeast	map04138
			Autophagy - yeast	map04138
			Autophagy - yeast	map04138
			Measles	map05162
			Measles	map05162
			Measles	map05162
			Influenza A	map05164
			Influenza A	map05164
			Influenza A	map05164
			Hepatitis C	map05160
			Hepatitis C	map05160
			Hepatitis C	map05160
			Herpes simplex infection	map05168
			Herpes simplex infection	map05168
			Herpes simplex infection	map05168
			Epstein-Barr virus infection	map05169
			Epstein-Barr virus infection	map05169
			Epstein-Barr virus infection	map05169

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000533s00015038.1	PF05773.17	RWD	34	147	7.90E-13
Glyur000533s00015038.1	PF00069.20	Pkinase	422	723	1.60E-50
Glyur000533s00015038.1	PF12745.2	HGTP_anticodon2	1054	1150	9.20E-06
Glyur000533s00015038.2	PF05773.17	RWD	34	147	4.10E-13
Glyur000533s00015038.2	PF00069.20	Pkinase	409	710	6.40E-51
Glyur000533s00015038.3	PF00069.20	Pkinase	5	264	4.10E-39
Glyur000533s00015038.3	PF12745.2	HGTP_anticodon2	652	748	5.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.088
SRR1783600	control	4.139
SRR1783602	moderate drought stress	5.220
SRR1811619	moderate drought stress	5.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.132
DRR006520	Root Summer glycyrrhizin high producing strain	3.976
DRR006521	Root Winter glycyrrhizin high producing strain	6.533
DRR006522	Root Winter glycyrrhizin high producing strain	6.438
DRR006523	Root Summer glycyrrhizin low producing strain	4.523
DRR006524	Root Summer glycyrrhizin low producing strain	4.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.438
SRR2868004	Drought Stress (root)	12.588
SRR2967015	Control (root)	13.266

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.087
SRR9715740	Leaf	5.572
SRR9715741	Leaf	5.215
SRR9715739	Root	0.663
SRR9715742	Root	3.797
SRR9715743	Root	3.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.508
SRR8749028	MeJA induced 9h	17.937
SRR8749029	MeJA induced 9h	12.363
SRR8749030	Uninduced	30.300
SRR8749031	Uninduced	73.262
SRR8749032	Uninduced	34.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.257
SRR8400027	Control - Root	10.751