Gene detail information of Glyur000533s00015036 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59400.1 | 7.00E-56 | enzyme binding;tetrapyrrole binding |
| NR | XP_004507334.1 | 3.47E-126 | PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Cicer arietinum] |
| COG | YP_007116010.1 | 3.00E-16 | serine/threonine protein kinase [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9LX31|GUN4C_ARATH | 5.00E-70 | Tetrapyrrole-binding protein, chloroplastic (Precursor) |
| trEMBL | tr|A0A072ULR7|A0A072ULR7_MEDTR | 2.00E-122 | Tetrapyrrole-binding protein {ECO:0000313|EMBL:KEH30321.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00533 | 22612 | 23445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000533s00015036.1 | PF05419.7 | GUN4 | 86 | 226 | 8.90E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.241 |
| SRR1783600 | control | 49.432 |
| SRR1783602 | moderate drought stress | 47.856 |
| SRR1811619 | moderate drought stress | 38.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.929 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.835 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.481 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.710 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 220.331 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 216.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.957 |
| SRR2868004 | Drought Stress (root) | 12.390 |
| SRR2967015 | Control (root) | 14.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.951 |
| SRR9715740 | Leaf | 90.374 |
| SRR9715741 | Leaf | 63.896 |
| SRR9715739 | Root | 35.748 |
| SRR9715742 | Root | 13.531 |
| SRR9715743 | Root | 16.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.871 |
| SRR8749028 | MeJA induced 9h | 2.240 |
| SRR8749029 | MeJA induced 9h | 2.000 |
| SRR8749030 | Uninduced | 0.575 |
| SRR8749031 | Uninduced | 0.643 |
| SRR8749032 | Uninduced | 0.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.194 |
| SRR8400027 | Control - Root | 27.065 |