Gene detail information of Glyur000532s00020777 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42905.1 | 2.00E-04 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | KHN39772.1 | 6.49E-15 | Putative ribonuclease H protein [Glycine soja] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 3.00E-10 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|I3SY99|I3SY99_LOTJA | 2.00E-12 | Uncharacterized protein {ECO:0000313|EMBL:AFK45241.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 149378 | 149800 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000532s00020777.1 | PF13456.1 | RVT_3 | 35 | 116 | 1.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.172 |
| SRR1811619 | moderate drought stress | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.202 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.791 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.082 |
| SRR2868004 | Drought Stress (root) | 0.051 |
| SRR2967015 | Control (root) | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.031 |
| SRR9715740 | Leaf | 4.954 |
| SRR9715741 | Leaf | 9.176 |
| SRR9715739 | Root | 0.035 |
| SRR9715742 | Root | 3.051 |
| SRR9715743 | Root | 2.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.034 |
| SRR8749028 | MeJA induced 9h | 0.096 |
| SRR8749029 | MeJA induced 9h | 0.112 |
| SRR8749030 | Uninduced | 0.307 |
| SRR8749031 | Uninduced | 1.297 |
| SRR8749032 | Uninduced | 0.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.406 |
| SRR8400027 | Control - Root | 0.266 |