Gene detail

Gene detail information of Glyur000532s00020772

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21530.1	5.00E-124	DNAse I-like superfamily protein
NR	XP_003547225.1	0	PREDICTED: uncharacterized protein LOC100776616 [Glycine max]
COG	YP_005443664.1	1.00E-13	hypothetical protein CLDAP_37270 [Caldilinea aerophila DSM 14535 = NBRC 104270]
trEMBL	tr\|I1MFA3\|I1MFA3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G10720.1}

Sequence

Transcript Sequence

>Glyur000532s00020772.1
ATGCTAAGTGTGATTAGAAGAAAACTCAGATACTTTTATTCAAGAATACTATGGCTACTATGGAAGCGCCCCCGGTCTAAGGTTGTTATCAAAAGGTTCAGAAAAATGAAGTGTAAGGGTCACTCTACTAGAGCAGAACTTTGCAACAACAACAAAAAATCTAAGAGTCACTCATCAAAGGGCCACTCAGTAGTAGTGGAGTCTGAATCTATCAGAAGGCCTATTCGGGTTGCTACTTTCAATGTTGCCATGTTTTCCCTTGCACCTGCTGTTTCAGAAGATGACGAGTGGGTTGAACAAGGATCTAACAAGAAAAAGAATTCTGATTTTCCAAAGAGTATACTAAAGCAATCTCCATTGCANGCCTCTCTCAGTCTTTCTGACTCCAACAAGGTTATGATGCCAAGATCAAATTTGAAGGTTTCCATTAACCTTCCTGATAATGAGATTTCATTGGCAAACAAAGAGGGTATTAATGGCAGTGTTTCTAGGAGAAATCAAGTCCCTGCAAGGTCTCCTGTGTGCTTTCCCTTCATGATGATGAATAGTAGTAGTTACTACTGTGATGAGGGCACTGAGAAGTTCACAAGCAGCAGAAGCATCCTGGAAGTTTTGAGGGAGGTTGATGCTGATGTGCTGGCACTGCAGGATGTGAAGGCAGAGGAAGAGAAGAGCATGAAGCCTCTTTCTGATTTGGCAGGTGCCTTGGGGATGAAGTATGTGTTTGCTGAGAGTTGGGCTCCTGAATATGGAAATGCCATCTTATCCAAATGGCCAATTAAGAGGTGGAAAGTTCAGAAGATTGCTGATGATGATGATTTCAGGAACGTTTTAAAGGCCACAATTGATGTGCCCTGGGCAGGAGAAATAAATTTCCACTCTACTCAACTTGACCATTTAGATGAGAATTGGAGAATGAAGCAAGTAAATGCAATAATCCGTTCCAATGACCCTCCCCACATCTTGGCAGGAGGTCTCAATTCTTTATACAGAGCAGATTACTCATCAGAGAGATGGACAGACATTGTTAGGTATTATGAGAAACTTGGAAAGCCAAGGCCAATGACAGAAGTGATGAACTTCATGAAATCAAAAGACTACGATGATGCAAAGGATTATGCAGGAGAATGTGAGCCCATTGTCATCATTGCCAAAGGCCAAAATGTGCAGGGAACATGCAAGTATGGCACAAGGGTGGATTACATTTTGGATTCCCCACACTCACCGTACAAGTTTGTTCCAGGGTCCTACTCTGTCATTTCTTCTAAAGGCACTTCTGATCACCACATAGTGAAGGTAGACATGATGAAAGTCAACACCTCTGCTCAGAAAAATGTCATGAGACAATGCAGGAAACTAAAGAGGAAGGTTGTGAGAATCACACCACCTTGTTCTGTAACCGGTGTGTGGGAATCAACCCCACCCCCCAAACTACTTATGCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00532	136129	138090	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000532s00020772.1	PF03372.18	Exo_endo_phos	199	428	4.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.353
SRR1783600	control	11.492
SRR1783602	moderate drought stress	10.759
SRR1811619	moderate drought stress	10.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.148
DRR006520	Root Summer glycyrrhizin high producing strain	0.135
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.610
DRR006524	Root Summer glycyrrhizin low producing strain	0.610
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.781
SRR2868004	Drought Stress (root)	37.582
SRR2967015	Control (root)	32.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.482
SRR9715740	Leaf	1.033
SRR9715741	Leaf	0.398
SRR9715739	Root	1.899
SRR9715742	Root	7.715
SRR9715743	Root	8.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.719
SRR8749028	MeJA induced 9h	100.399
SRR8749029	MeJA induced 9h	28.423
SRR8749030	Uninduced	106.307
SRR8749031	Uninduced	39.723
SRR8749032	Uninduced	27.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.864
SRR8400027	Control - Root	46.292