Gene detail

Gene detail information of Glyur000531s00022822

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20050.2	4.00E-132	Pectin lyase-like superfamily protein
NR	KEH25124.1	0	polygalacturonase QRT3-like protein [Medicago truncatula]
Swissprot	tr\|O49432\|QRT3_ARATH	3.00E-166	Polygalacturonase QRT3 (Precursor)
trEMBL	tr\|A0A072U5U5\|A0A072U5U5_MEDTR	0	Polygalacturonase QRT3-like protein {ECO:0000313\|EMBL:KEH25124.1}

Sequence

Transcript Sequence

>Glyur000531s00022822.1
TCTCCTCTCTCTATAATGTTTTTCCTTCTTATTTATATGCTCTCACAACAAGNGTCCTTTTCAAAACTGGTTCTCCCTAATCAACCTGATTAGCTCAAACAGGCTCACCAATGGGAACCACAATGGCAAGCACAGGTCCAATGTGGTTCATGCTTCTGAGGATGGCTTGTTTCTTTGTATTGACTCATGCTTATGAGGGGAACAACTTGCCTCTGATGAGGACTATTTCTGGTGGTGGCACTCATCATCATGGAACAATGCTTGAACTGAAGGCATTCAAGGCTTCTCTCACAAGGCATGACTCCATTGCTTCATCATCACCATCTTCCCTCTCACCTTCTCCTAGCCCTTCTCCTATGCCATCACAGGATCTCAAGAAACCACACATGTACCTTGTGACATCTTATGGTGCTGATCCAACAGGCAATTCAGATAGCACTGAAGCTCTTCTTGCAGCCATAGCAGATGCGGTCAAAGGTCCAAGTCAAGGGTTCTTGATGAATGGCATTAGTGACCTTGGAGGTGTCCAGGTTAATCTTCAGGGTGGAAACTACATGATCAGCAAACCACTGCAGTTGCCCGTGGCTGGGGTTGGAAACCTCATGATACATGGGGGAACTATAAGAGCCTCAAATGATTTCCCATCAAATGGACACCTCATTGATTTGTCAAACTCTGGAGAAAGCAAGAAGGGTTCCACCTCATCATCCTACAATTATGAGTACATAACTCTCAAGGACCTCTTGCTGGACTCCAACTTCAGGGGTGGTGGCATTTCAATAATGAACTCACTCAGAATCAACATAGACAANTGTTACATCACACATTTCACCACCACAGGAATCTTAGTCCAAAGACTTCATTCACCAAAAAAAAAATTATTCAGGACTGCTGTCACAGATGTTGTGATTTTCTCTGCTGCTATAGGAATCATGGTCACTGGTCAAGCCAACACAATTTCTGGTGTGCATTGCTATAATAAGGCCACTAGCTTTGGAGGCACAGGGATTTACTTGAAACTACCAGGTTTGACACAAACAAGGATTGTGAATTCTTACATGGATTACACCAACATTGTTGCTGAAGACCCAGTTCAACTACATATCTCTAGTAGCTTCTTCCTTGGTGATGCAAACATTGTCCTAAAATCAATCAAAGGGGTAGTGAGTGGTCTCAATATTGTTGACAACATGTTCTCTGGATCAGATCATGGGGTTGAAATTGTGAAGCTGGACCAATCAAATAGTCTTTTTAATCAAGTTGATCAAGTTTTTGTTGCTAGGAATGTTGTGAAGGGTATGAAGTTAAAGGCTACAGCTGCAATGATATCTATGCATGGGAATGGAACCTCATGGAAAGCTGATTTCAACAAAGTTTTGCTTTTTCCTAACCTTATTAAACATGTTCAGTACTCAATAAGCACCACAGGGAGCACCTTCCCAAACCATGCTCTCAGAAATGTGTCTGAGAATTGTGTTGTGATTGAAACAGATGAGGCAGTCACTGCAAATGTTTTTGTCACTGTGGATCAAGGTGTTGTGAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00531	123890	127074	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000531s00022822.1	PF12708.2	Pectate_lyase_3	96	284	2.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.169
SRR1783600	control	0.166
SRR1783602	moderate drought stress	0.272
SRR1811619	moderate drought stress	0.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.990
DRR006520	Root Summer glycyrrhizin high producing strain	2.881
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.513
DRR006524	Root Summer glycyrrhizin low producing strain	0.384
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.907
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.645
SRR2868004	Drought Stress (root)	1.279
SRR2967015	Control (root)	1.446

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.592
SRR9715740	Leaf	0.834
SRR9715741	Leaf	2.231
SRR9715739	Root	0.000
SRR9715742	Root	0.222
SRR9715743	Root	0.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.582
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.226
SRR8749030	Uninduced	0.360
SRR8749031	Uninduced	0.196
SRR8749032	Uninduced	0.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.737
SRR8400027	Control - Root	2.976