Gene detail information of Glyur000531s00022816 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27170.1 | 5.00E-51 | transmembrane receptors;ATP binding |
| NR | XP_004489498.1 | 0 | PREDICTED: uncharacterized protein LOC101494533 [Cicer arietinum] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 1.00E-58 | TMV resistance protein N |
| trEMBL | tr|A0A072UCP7|A0A072UCP7_MEDTR | 0 | TIR-NBS-LRR class disease resistance protein {ECO:0000313|EMBL:KEH23635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00531 | 62273 | 69958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000531s00022816.1 | PF01582.15 | TIR | 45 | 177 | 3.90E-38 |
| Glyur000531s00022816.1 | PF00931.17 | NB-ARC | 224 | 284 | 9.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.686 |
| SRR1783600 | control | 0.688 |
| SRR1783602 | moderate drought stress | 4.632 |
| SRR1811619 | moderate drought stress | 4.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.477 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.584 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.455 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.079 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.034 |
| SRR2868004 | Drought Stress (root) | 3.350 |
| SRR2967015 | Control (root) | 3.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.332 |
| SRR9715740 | Leaf | 0.118 |
| SRR9715741 | Leaf | 1.077 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.521 |
| SRR9715743 | Root | 2.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.854 |
| SRR8749028 | MeJA induced 9h | 3.754 |
| SRR8749029 | MeJA induced 9h | 1.219 |
| SRR8749030 | Uninduced | 0.855 |
| SRR8749031 | Uninduced | 1.098 |
| SRR8749032 | Uninduced | 0.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.781 |
| SRR8400027 | Control - Root | 7.006 |