Gene detail

Gene detail information of Glyur000531s00022808

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	9.00E-84	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_004489498.1	0	PREDICTED: uncharacterized protein LOC101494533 [Cicer arietinum]
COG	NP_522403.1	3.00E-07	hypothetical protein RS05354 [Ralstonia solanacearum GMI1000]
Swissprot	tr\|Q40392\|TMVRN_NICGU	2.00E-53	TMV resistance protein N
trEMBL	tr\|A0A072U6R9\|A0A072U6R9_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH25076.1}

Sequence

Transcript Sequence

>Glyur000531s00022808.1
ATGTCATCTCTTGTTCCTTTAGATGTAAGAAATAGTGGTTCCCATGAACTATTATCTATTTCCAAATACCTACCAGGACTTCAAAGTCTCTGGGTGGAGTGCGGCTCAGAACTTCAACTTTCTCGAGATGCAACAATAATTTTGGATGCCTTATATGCCACAAATTCTAATGAATTTAAATCAACTGCAACTACATCTCGAGCATCAAATATGAAGCCGGGCCATTTTTTGCACGACCCGACCCATTTTACCACCTTAGAAAGAAGGAAACGTAGTCGTACTCGGGACAACAGGGAAGGGAAGGGTCGACCACAAGATTTTAATGCTCACACTCTTGACAACTTGCAAGATTCGAACCCTGAACCGGCAATGCTCTCTCTGAAAGCTCTCCTCATTTCCGTCGCCGTTATTTTCACGGCGTTGGGGCTGGCGGTCTCTGATTCTCTCCCTCTCCTCTGGAGCTTCTTGCTCCACTGCTTCACGCCTCCCTACCTCTACGTCACAGTCAATGCCATCATCAATTCCCTCATCGCCTTTTACAGGTCCGACCGCTCCGCCGCTGAAGCCAACCACACATACCTCTTTAACTTTTTGTATGTCGCGGAGTTTCCACCGGTACCCCTCGTCTCTCCTAGGTTCAGTCCTGAAGACAAGTCGGAGCGAGCGGAAGACTTCACAAACAAGGTCATGGTGGAGTGGAGGCAACAGTGGATGGATTTATTAAGGAGGCATGAAGTATTCTTAAGTTTCAGAGGGAAAGATTGTCGTGCATCCTTCATTTCACATCTCCATGATTCTCTTAAAGAGTCCGGGATCAAAGTTTTCAAGGACGATGATTCTCTTAAGAGAGGAGATCACATTTCAACGTCGCTATTGCTAGCAATTGAACAATCTCGAATCTCTATAATTGTTTTCTCGAGGAACTACGCGGATTCGCGATGGTGCCTGGAAGAGCTGGTGAAGATAATGGAGTGGCACAGGACTGAAGGGCAGGTGGTTCTCCCAGTGTTCTACAATATTGATCCATCGGAAGTGCGTCACCAAACGGGTGAGTTTGGAAATGCATTTCAAAATCTATTGGATAGAGTTTCAAAGAAAGGACATTATGATGTGCTTGGAAAAGCACTTCGAAATCTTTTCAACAGTGATTCAAAGTTGATGAATTTGGAACGCAGTTGGAGAGAGGCGCTTCGTGAGGCGGCTGGCCTTGCAGGGGATGAAAGTGAAGCTATCAAGAATATTGTTGAAAAACTAAATGCTTTGTGTGGAAGTCGTAAATGGTTTGGTCGAGGGAGTAGAATAATCATCACAACCAGGGATATGCATATACTTGGGAATAGAGTTGAGAAGCAATCGAGTCCTATAAAAGATTTTGTTGGAATTTCCAGAAATATAGTGGAGTATTCCGGAGGATTGCCACTGGCTCTGGCAGTCCTTGGGTCGTATTTGTTTGATAGGGGTGTAGCAGAGTGGAATTGTGTATTGGAGAAACTCAAAAAAATTCCCAATGGTCAAGTACAAAGGAAATTAAAAATAAGCTATGATGCTTTAAATGATGATATCCAAAAAGAGATATTCCTTGACATTGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTCATACATATATTAAATGATTGCGGACTTTTTGCCGAAATTGGAATTAGTGTTCTTGTAGAGCGAAGCCTTGTAACTATCAATGGTAAGAATAAGCTTGGAATGCATGATTTGCTACGAGATATGGGAAGAGAAATTATTTGTGAGAAATCACCAAAGGAGCTTGAGGAGCGTAGCAGGTTGTGGTTTGACGAGGATGTGATTAATGTATTAACAGAACAAACTGGAACAAAGGCTGTTGAGGGATTGGCTTTGAATGTGCCAAGAGCTAGTGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGAAAAGACTCAGATTGCTTCAACTTGATGGTAGGTTGGAGAAGCTGAAAATTTTCAATCTTAGTCATTCTCATTATCTGACACACACCCCTGACTTTTCACACTTGCCTAATCTTGAAAAGCTAGTGCTCAAAGATTGTCCAAGCCTGTCTGAAGTTTCCCAAAGTATTGGACATCTTAATAAAGTTCTATTGATAAATCTGGAAGACTGTATTAGCCTTCAAAACCTTCCAAGAAGCATCTATAGGTTGAAATCTCTAAAAACTCTCATTCTTTCTGGGTGTTTAAAGATTGACATGTTGGAAGAGGACTTGGAACAAATGGAATCTTTAACCACTTTGATTGCAAATAACACTGCAATAACAAGAGTGCCATTTTCAGTAGTAAGGTTAAAAAACATTGGATATATTTCTTTGTGCGGCTATGAAGGATTCTCACATGATGTGTTTCCATCTATCATTCAGTCTTGGATGTCACCAACAAATACTCTTCCATTCCCATTTCAAACATCTGCTGCCATGTCATCCCTTGTTCCTTTAGGTGTACCAAATAATAGTTCTCACGAACTTCAACTTTCTCGAGATGCAGCAATAAGTTTGGATGACTTATATCCCACAAATACTAAGGACTTGGAATCAAGTGCAACTACATCACAAAATAAGGATAGTGGTTGTTTGCTCCCCAGCGATAGTTATCCAGATTGGTTAAGCTTCAATTGCGAAGATTCTTCTGTAATTTTTGAAGTCCCTCAAGTGGAAGGACGAAACTTGAAGGCGATGATGTGCATTGTTTATTCATCAGCCCCAGATAACATGGCATCAGATGGCCTTAAAAATTTGATAGTGATAAATCACTCAAAAGCCACCTGCATTCAGCTCTCTAAGAGAGAGGTATTCGCCTCATTTGAAAATGAGGAGGGGCAGAGAATAATGTCAAGTATAGAACCCGGTAACAAAGTGCAGGTGGTGGTTGTTTTTGAGAACAGTTTCATTGTGAAGAATACAACAGTTTATCTCATATACAATGAACCAATTGGTGAAGAAATTGAGCAACATCATGCATCAGATGAGATTGTCACTAATTGCAATGGTCATGAAAATAATGAACCAATTGGTGAAGAAGTTGAGCAACATCATGCATCAGATGAGATTCTCACTAATTGCAGTGGTCATGCAACAGATAGGAACGTTACTGTCTGTAGTGGTGACGCAAATGATTGCGATGTCCGGAGGAATCACCTAATGAAGTTTGCGGTATGCGGTTTGACGGTGTTATTTGGAGCTCTTGCAACCAAAAAGGTCTGGCGCAAGATCCGACATTGTTATAGATAG

Protein Sequence

>Glyur000531s00022808.1
MSSLVPLDVRNSGSHELLSISKYLPGLQSLWVECGSELQLSRDATIILDALYATNSNEFKSTATTSRASNMKPGHFLHDPTHFTTLERRKRSRTRDNREGKGRPQDFNAHTLDNLQDSNPEPAMLSLKALLISVAVIFTALGLAVSDSLPLLWSFLLHCFTPPYLYVTVNAIINSLIAFYRSDRSAAEANHTYLFNFLYVAEFPPVPLVSPRFSPEDKSERAEDFTNKVMVEWRQQWMDLLRRHEVFLSFRGKDCRASFISHLHDSLKESGIKVFKDDDSLKRGDHISTSLLLAIEQSRISIIVFSRNYADSRWCLEELVKIMEWHRTEGQVVLPVFYNIDPSEVRHQTGEFGNAFQNLLDRVSKKGHYDVLGKALRNLFNSDSKLMNLERSWREALREAAGLAGDESEAIKNIVEKLNALCGSRKWFGRGSRIIITTRDMHILGNRVEKQSSPIKDFVGISRNIVEYSGGLPLALAVLGSYLFDRGVAEWNCVLEKLKKIPNGQVQRKLKISYDALNDDIQKEIFLDIACFFIGMDRNDVIHILNDCGLFAEIGISVLVERSLVTINGKNKLGMHDLLRDMGREIICEKSPKELEERSRLWFDEDVINVLTEQTGTKAVEGLALNVPRASAKCFSTKAFKKMKRLRLLQLDGRLEKLKIFNLSHSHYLTHTPDFSHLPNLEKLVLKDCPSLSEVSQSIGHLNKVLLINLEDCISLQNLPRSIYRLKSLKTLILSGCLKIDMLEEDLEQMESLTTLIANNTAITRVPFSVVRLKNIGYISLCGYEGFSHDVFPSIIQSWMSPTNTLPFPFQTSAAMSSLVPLGVPNNSSHELQLSRDAAISLDDLYPTNTKDLESSATTSQNKDSGCLLPSDSYPDWLSFNCEDSSVIFEVPQVEGRNLKAMMCIVYSSAPDNMASDGLKNLIVINHSKATCIQLSKREVFASFENEEGQRIMSSIEPGNKVQVVVVFENSFIVKNTTVYLIYNEPIGEEIEQHHASDEIVTNCNGHENNEPIGEEVEQHHASDEILTNCSGHATDRNVTVCSGDANDCDVRRNHLMKFAVCGLTVLFGALATKKVWRKIRHCYR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00531	29133	40797	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000531s00022808.1	PF14364.1	DUF4408	149	178	1.50E-07
Glyur000531s00022808.1	PF01582.15	TIR	246	366	1.40E-36
Glyur000531s00022808.1	PF00931.17	NB-ARC	456	550	2.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.538
SRR1783600	control	2.189
SRR1783602	moderate drought stress	7.264
SRR1811619	moderate drought stress	7.456

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.209
DRR006520	Root Summer glycyrrhizin high producing strain	2.228
DRR006521	Root Winter glycyrrhizin high producing strain	0.456
DRR006522	Root Winter glycyrrhizin high producing strain	0.525
DRR006523	Root Summer glycyrrhizin low producing strain	1.967
DRR006524	Root Summer glycyrrhizin low producing strain	2.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.535
SRR2868004	Drought Stress (root)	3.880
SRR2967015	Control (root)	2.438

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.834
SRR9715740	Leaf	0.443
SRR9715741	Leaf	1.101
SRR9715739	Root	0.041
SRR9715742	Root	1.584
SRR9715743	Root	1.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.061
SRR8749028	MeJA induced 9h	0.611
SRR8749029	MeJA induced 9h	0.103
SRR8749030	Uninduced	0.178
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.129

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.465
SRR8400027	Control - Root	5.111