Gene detail information of Glyur000531s00022807 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 2.00E-24 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_004489498.1 | 3.47E-64 | PREDICTED: uncharacterized protein LOC101494533 [Cicer arietinum] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 7.00E-14 | TMV resistance protein N |
| trEMBL | tr|K7KD01|K7KD01_SOYBN | 1.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G06902.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00531 | 28650 | 29101 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000531s00022807.1 | PF00560.28 | LRR_1 | 3 | 24 | 0.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.338 |
| SRR1783600 | control | 10.426 |
| SRR1783602 | moderate drought stress | 20.333 |
| SRR1811619 | moderate drought stress | 21.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.394 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.809 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.594 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.185 |
| SRR2868004 | Drought Stress (root) | 10.395 |
| SRR2967015 | Control (root) | 12.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.956 |
| SRR9715740 | Leaf | 4.127 |
| SRR9715741 | Leaf | 3.910 |
| SRR9715739 | Root | 0.771 |
| SRR9715742 | Root | 2.856 |
| SRR9715743 | Root | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.404 |
| SRR8749028 | MeJA induced 9h | 5.763 |
| SRR8749029 | MeJA induced 9h | 0.964 |
| SRR8749030 | Uninduced | 2.292 |
| SRR8749031 | Uninduced | 1.254 |
| SRR8749032 | Uninduced | 0.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.378 |
| SRR8400027 | Control - Root | 13.227 |