Gene detail

Gene detail information of Glyur000531s00022806

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27170.1	2.00E-53	transmembrane receptors;ATP binding
NR	KEH25081.1	1.07E-119	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-58	TMV resistance protein N
trEMBL	tr\|A0A072U6S4\|A0A072U6S4_MEDTR	4.00E-120	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH25081.1}

Sequence

Transcript Sequence

>Glyur000531s00022806.1
ATGGATATTGCTAGAAGTTTATTCGATGATTCTGATCAAGACCCCCATAATCCAAACGACAAACGCACGAGACCTACTACACCTTCCTTGCAACTCTCATTCAACAAGAGGCTTTCCCTCCCAATTTTCACGGGTAATAAGATAGTTGGCACTGATGGGAACCCCATCACCATAGTCCTTCTTGACAAGGGTTCCCAAGTGGTGGTCCCCACAAGTTTCCCCTACCCGATCAAGCTAGAGATTGTGGTCCTCGATGGGGAATTCCCACACGGTGGTGAGAAAGAGGATTGGACTAGTGAGGAGTTCAATAGAAACATAGTGAAGGAGAGAAGCGGGAAGAGACCATTGCTTGCTGGAGTAGTGAACCTGACNATGAGGGATGGGGTTGCACCAATTGGGGACGACATAAAGTTCACGCATAACTCTAGCCGGAAGATGAGGAACAGGAAGTTCAGGGTTGGAGTGAGGGTTGCTCCGGGGAGTAGTAGCATTAGCAATCAAGGTGTGCATAGGCGGAGCCTGCGGAGGATCTATGAAGTGTTTTTAAGTTTCAGAGGAGAAGACACTCGAGCCTCCTTCACTTCACATCTCTACACTGCTCTTAAAAATGCTGGAATCAACATTTTCCGGGATGATCCGTCGCTTGAGAGGGGAGATCACATTTCAACATCGCTATTGAAAGCAATAGAACAGTCTCAAATTTCGGTTATCGTTTTCTCAACAAATTACGTGGATTCAAGGTGGTGTCTCCAAGAGTTGGAGAAGATAATGAAGTGGCGTAGAACCCGAGGGCAGGTGGTTCTGCCAGTGTTCTACGATGTGGATCCCTCAGAAGTGCGTCATCAGACAGGCAAGTTTGGAAAAGCGTTTCAGAATCTGTTGAACAGAATTTCAGGGAAGGAAGAAGAGAAGCGGAATTGGAGAGGGGCGCTTCGTGAGGCTGCTGGCATTGCAGGGTATACAGTCCTAAACTCCAGGAATGAAAGCGAGGTTGTCAAGCATATTGTTCAAAAGGTTACACATTTGACTAACAAGACAAACTTGTTTGTTGCTGATAANCCCGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCAATTATTAAACATCCGACAACTAGATGGTGCTTTACTACTTGGGGTGTGGGGCATGGGAGGGATTGGAAAAACAACCATTGCAAAAGTCATTTACAATAAAATTGGCCGCAATTTTGAAGGTAGGAGCTTCCTTACCAGTATTAGAGAAGCTTGGAAGCGAAATGATGGACATTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00531	8820	13960	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000531s00022806.1	PF07887.6	Calmodulin_bind	30	161	7.70E-41
Glyur000531s00022806.1	PF01582.15	TIR	180	312	2.50E-39
Glyur000531s00022806.1	PF00931.17	NB-ARC	358	416	2.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.452
SRR1783600	control	3.554
SRR1783602	moderate drought stress	8.214
SRR1811619	moderate drought stress	8.914

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.808
DRR006520	Root Summer glycyrrhizin high producing strain	3.788
DRR006521	Root Winter glycyrrhizin high producing strain	2.866
DRR006522	Root Winter glycyrrhizin high producing strain	2.930
DRR006523	Root Summer glycyrrhizin low producing strain	3.248
DRR006524	Root Summer glycyrrhizin low producing strain	3.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.823
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.812
SRR2868004	Drought Stress (root)	9.163
SRR2967015	Control (root)	11.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.691
SRR9715740	Leaf	2.048
SRR9715741	Leaf	1.991
SRR9715739	Root	0.768
SRR9715742	Root	3.025
SRR9715743	Root	2.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.889
SRR8749028	MeJA induced 9h	4.498
SRR8749029	MeJA induced 9h	1.154
SRR8749030	Uninduced	2.118
SRR8749031	Uninduced	0.614
SRR8749032	Uninduced	0.560

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.871
SRR8400027	Control - Root	12.596