Gene detail

Gene detail information of Glyur000529s00019356

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51880.1	1.00E-79	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	NP_001236245.1	7.81E-149	uncharacterized protein LOC100526938 [Glycine max]
COG	YP_007097583.1	6.00E-24	putative iron-regulated protein [Chamaesiphon minutus PCC 6605]
trEMBL	tr\|C6T2T3\|C6T2T3_SOYBN	3.00E-149	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU15960.1}

Sequence

Transcript Sequence

>Glyur000529s00019356.1
AATAACTACACCTACTAATCAACCACTTACCAAAAAAAAGAGAGAGAAAGATTGGTGGCAATGACAGAGAGGCTAACGAGGAAGAGGAAGATGGGAGAGAGAAAGGAGACAGTTCTGAAGAATCCGGCGGCAAAATGGCCTCCCATCAAACCCAAAAAGAATCTCCAGATTACCCGCTTGCGAGACATCGATCTCTTCACGGTCCAGAATTTTTTCTCGTCTGCTGAATCAAAGGCATTCATTAAAACTGCTGAGGGAATTGGTTTTGCTCCTCAAGGGAGTTTGGGTCCAGCTAAAGGTGAAGCTTACAGAGATAATGATCGAATCTCAGTGAATGATCCTGTCCTTGCAGATTCAGTTTGGGAATCTGGACTTAGCAAACTATTTTCTGATATAAGAATTCGAGGGAAGGCTGCTGTTGGTCTCAATCCAAATATTAGACTCTATAGGTACAAGGTTGGTCAACGCTTTGGGCGACATATTGATGAAAGTGTTGATCTTGGAGGTGGAAAACGCACTTATTATACTTTGCTAGTGTATTTAAGTGGTGGACCTGTTGAACTTAAATCAAAGTCGAAAAACGATTCCAGCAACCCCACAGATTCATCTTTTGAACCTTTAGTTGGTGGAGAAACTGTCTTCTATGGTCACAGAAATAGCACTGTGGCTGAGGTTGCTCCCATTGAAGGGATGGCACTCTTGCACCTTCACGGAGACAAATGCTTGTTGCATGAAGCCAGAAATGTTACCAAGGGTGTCAAATATGTGTTTCGTTCAGATGTTGTATTTGCTTGAAGAATGGTTCATGTCTTGTATCAAATAGTCTGGTATATTCTTCTCCTGAAGGCTTTCTCTTTGTTAGCTTATCACTTAAAAAAATTATATTGTCTTGATCTTCATTATTGGTAATATATTATGTGTGCAATTGTATGCCACAAACAGGAAGTCATTTTGAATAACTCACATATTTGGAAAAATCTGGTTAATTAAGTCAGCTACCTACTCAGAACATTATAAAAAATGGCAGTCTGGTACTGTAATATAAAGTTCCCGCTACTCAGAACATTATATGAATATTTTTATCTTTTTCCAGAATTTAGGGATAATTTCTCTTGGATACTTGAAGTTGAATATCAAACTATTGTCCTTTTTTACCCCTATAGGATTGTGAGAGTATTTAGTAATTTCTGGATATATGTTTGTAGTGATGTTTCTTGCTTCTACCGATCCATCGCATTTTGTTTGCAGTTTGAAATTCATGGATATCTTGTTTGCAGTTTAAAATTCACATTTATGAATGCTGCATATTCTTCAAGTTTTGGGGCTAAAATTAGTCTTTACATTTGCCGGCCTTNAGCATTCATAGAATGAAAGAGGCTTGGGGTCCATCAACACGGAATGGAAAGACTATATTAGAAAAACAACATTAAAAAAAAGTATTGAAGGACGATATTAGAAAACCTCATGGTTGTGTGCACAAATGAACATTTTTCCTTCGCCATTCATAAAATGAGGTATACAAGCATAATCACATTTATTTCAACATGAGTAGTAACAAGATCTTTATGATAATATTGTAAAGAATAAAAGTGGTGCAAAGAAGAAAAAGAATCAGGGCAAATTANTCTTTAATCTCTGTATCTCTTAATTCACAATCCTGCAATTAAGTCTCACTTCTCCATTATCAGAGNCTCTTAGATTTCCAAGTTTCATCATTGAAGTTGCAAACTCTTTGAAGAACAAACTCTGGTCTCTTGCAAATGCTTCAACAATCCATCTAGTTCTGTAATCACCAATAAGTGACTGATCGGAAGAAAACACACCTTTTCCAGCCAGCAGCTGTTTGTAATAGTCATTATCAAACACTGATGCTGTTGAGTCCAGGAATTGTCCTGCGTCGTGGTTGTTGTTTGGTTTTGGACATTTATTTCTTAGGTCTAGTGCAAACTCAGTGTTCATACTTGGATCAGTATTATGCAATGAACTGAAGTTATGAAGACGAGCCTCAAAGGAAGAACAATGTGAAAAGCCTAGAGTGTGTCCCCCAGATAAAGTCACCATATCTTTAACTCCTAACCCTCTCTTATCAAAGCTCTGAATGAGTTGGCTTACATTGAAGGTTGGAGCCGGCAAGTTGATGGTATCAGATGCCTTTGATACCCTTCCATCTTTCCGTCCTTTTAGTACATTCCAATATGGACCTCCAGACTGTCAAAGCAAATAAGAAATATTGATGTTGTAATAAATAACTAGATTCAAGTTATGCTAATGTTCCATGGATGGATCCTCATGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00529	115024	117936	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000529s00019356.1	PF13661.1	2OG-FeII_Oxy_4	119	164	1.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.007
SRR1783600	control	5.107
SRR1783602	moderate drought stress	3.419
SRR1811619	moderate drought stress	3.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.946
DRR006520	Root Summer glycyrrhizin high producing strain	9.091
DRR006521	Root Winter glycyrrhizin high producing strain	9.256
DRR006522	Root Winter glycyrrhizin high producing strain	8.836
DRR006523	Root Summer glycyrrhizin low producing strain	9.055
DRR006524	Root Summer glycyrrhizin low producing strain	9.299
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.673

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.450
SRR2868004	Drought Stress (root)	18.102
SRR2967015	Control (root)	16.240

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.662
SRR9715740	Leaf	9.711
SRR9715741	Leaf	11.733
SRR9715739	Root	3.592
SRR9715742	Root	6.404
SRR9715743	Root	6.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.965
SRR8749028	MeJA induced 9h	6.496
SRR8749029	MeJA induced 9h	5.564
SRR8749030	Uninduced	5.625
SRR8749031	Uninduced	3.372
SRR8749032	Uninduced	3.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.534
SRR8400027	Control - Root	13.568