Gene detail

Gene detail information of Glyur000529s00019355.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51890.1	1.00E-132	Peroxidase superfamily protein
NR	XP_003592341.1	0	Peroxidase [Medicago truncatula]
Swissprot	tr\|Q9LT91\|PER66_ARATH	4.00E-169	Peroxidase 66 (Precursor)
trEMBL	tr\|G7IC23\|G7IC23_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46249.1}

Sequence

Transcript Sequence

>Glyur000529s00019355.1
GTCTAGGTGGATTGATATACTAGCTAGGTCTTAGTGCAGAACAAAGGGGAAGTCCAAATTCTGTACTTCTAGGCTAATATTCCAAACTTTGAGTGGCTTCAAAGTACAATAAATCTTAGTTAAGCTTGTATTTTATTTGCTAAAATCGTTCACTTCAATTCTATATATACTGTGATACATCTTTTCATGAAATTCTCATCCAATCCTCATTTTTCAAGTTCTAGAGTTCTTACTTAATTTATCGTATGGCTCCTCTGCCAGCAAAAAACATCTTTCCAATCATTTTCCTCCTCTTTACAATATTTTCATTATCCAAAGCTGAACTTCATGCTCATTACTATGACCAAACATGTCCACAATTGGAAAAAATAATATCAGAGACGGTTCTCCATGCTTCCATGCATGACCCAAAAGTCCCAGCTCGTATTTTGAGGATGTTCTTCCATGATTGTTTCATAAGGGGATGTGATGCATCAATATTGTTGGACTCAACTGTCACTAACCAAGCAGAGAAAGATGGCCCTCCNAATATCTCAGTTCGATCGTTCTATGTGATCGATGATGCTAAAGCAAAGCTTGAGCTGGCTTGCCCAGGAACTGTTTCTTGTGCTGATATACTTGCTATTTCAGCAAGAGATGTGGTGGCCATGTCTGGAGGTCCATATTGGAATGTACTAAAAGGACGGAAAGATGGAAGGGTATCAAAGGCATCTGATACCATCAACTTGCCGGCTCCAACCTTCAATGTAAGCCAACTCATTCAGAGCTTTGATAAGAGAGGGTTAGGAGTTAAAGATATGGTGACTTTATCTGGGGGACACACTCTAGGCTTTTCACATTGTTCTTCCTTTGAGGCTCGTCTTCATAACTTCAGTTCATTGCATAATACTGATCCAAGTATGAACACTGAGTTTGCACTAGACCTAAGAAATAAATGTCCAAAACCAAACAACAACCACGACGCAGGACAATTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAGCTGCTGGCTGGAAAAGGTGTGTTTTCTTCCGATCAGTCACTTATTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGACCAGAGTTTGTTCTTCAAAGAGTTTGCAACTTCAATGATGAAACTTGGAAATCTAAGAGNCTCTGATAATGGAGAAGTGAGACTTAATTGCAGGATTGTGAATTAAGAGATACAGAGATTAAAGANTAATTTGCCCTGATTCTTTTTCTTCTTTGCACCACTTTTATTCTTTACAATATTATCATAAAGATCTTGTTACTACTCATGTTGAAATAAATGTGATTATGCTTGTATACCTCATTTTATGAATGGCGAAGGAAAAATGTTCATTTGTGCACACAACCATGAGGTTTTCTAATATCGTCCTTCAATACTTTTTTTTAATGTTGTTTTTCTAATATAGTCTTTCCATTCCGTGTTGATGGACCCCAAGCCTCTTTCATTCTATGAATGCTNAAGGCCGGCAAATGTAAAGACTAATTTTAGCCCCAAAACTTGAAGAATATGCAGCATTCATAAATGTGAATTTTAAACTGCAAACAAGATATCCATGAATTTCAAACTGCAAACAAAATGCGATGGATCGGTAGAAGCAAGAAACATCACTACAAACATATATCCAGAAATTACTAAATACTCTCACAATCCTATAGGGGTAAAAAAGGACAATAGTTTGATATTCAACTTCAAGTATCCAAGAGAAATTATCCCTAAATTCTGGAAAAAGATAAAAATATTCATATAATGTTCTGAGTAGCGGGAACTTTATATTACAGTACCAGACTGCCATTTTTTATAATGTTCTGAGTAGGTAGCTGACTTAATTAACCAGATTTTTCCAAATATGTGAGTTATTCAAAATGACTTCCTGTTTGTGGCATACAATTGCACACATAATATATTACCAATAATGAAGATCAAGACAATATAATTTTTTTAAGTGATAAGCTAACAAAGAGAAAGCCTTCAGGAGAAGAATATACCAGACTATTTGATACAAGACATGAACCATTCTTCAAGCAAATACAACATCTGAACGAAACACATATTTGACACCCTTGGTAACATTTCTGGCTTCATGCAACAAGCATTTGTCTCCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00529	113783	116611	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000529s00019355.1	PF00141.18	peroxidase	51	288	1.10E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.769
SRR1783600	control	2.949
SRR1783602	moderate drought stress	2.293
SRR1811619	moderate drought stress	2.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.526
DRR006520	Root Summer glycyrrhizin high producing strain	5.593
DRR006521	Root Winter glycyrrhizin high producing strain	3.634
DRR006522	Root Winter glycyrrhizin high producing strain	3.400
DRR006523	Root Summer glycyrrhizin low producing strain	6.708
DRR006524	Root Summer glycyrrhizin low producing strain	6.880
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.326
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.250
SRR2868004	Drought Stress (root)	2.957
SRR2967015	Control (root)	2.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.370
SRR9715740	Leaf	0.478
SRR9715741	Leaf	1.194
SRR9715739	Root	0.220
SRR9715742	Root	2.130
SRR9715743	Root	1.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.986
SRR8749028	MeJA induced 9h	0.805
SRR8749029	MeJA induced 9h	2.059
SRR8749030	Uninduced	2.659
SRR8749031	Uninduced	1.820
SRR8749032	Uninduced	1.566

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.416
SRR8400027	Control - Root	1.638