Gene detail

Gene detail information of Glyur000529s00019347

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51950.1	0	Glucose-methanol-choline (GMC) oxidoreductase family protein
NR	XP_004496619.1	0	PREDICTED: protein HOTHEAD-like isoform X2 [Cicer arietinum]
COG	YP_007093192.1	2.00E-38	glucose-methanol-choline oxidoreductase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|I1NGP4\|I1NGP4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G29370.1}

Sequence

Transcript Sequence

>Glyur000529s00019347.1
CAGAAATGATGTGGGAGATTAGCACAAAAACAAATTCCAATCCGTGAAGTTACTTATTGTATAAATTGTGGTAATGCTATTTCCATTCCAAGAAGTCACTGTCACACGTCATGCATTTCAACATTTCCAATAATATTGGATCTTTGCATGGAGTAGAATGCAAATTGGATGTTGTTGAACAAACTAATTTTGTGTGCAAGAGCAAAGGGTGGCGCATGAATCAGTGGCTTTAATTTTCTTTGTTATAATTATAATTATAATATTACATAAAAGGGGCCACAGTTGAGCTTTGATTTGCTGAGAAGACCTTGCAAATTGTCCTAGCTTCTAAGTTCTAACAATTGGAAGGCCAGACATCAATGGGTTGGTTGTTCCAGCAATTTATATGGATATTTCTTGCTGGGAGCCTGTTCTGTAATGTCTTATCTCATCCTGACAAAGCTCCAAAGTATACATTTGTCAAAGAAGCAACTTTTGCTCCTCCAATCTTATCTTACGACTATATAGTCATTGGTGGAGGAACATGTGGGTGTCCACTAGCGGCAACTCTCTCACAAGGTGCCAGAGTTTTAGTCCTTGAAAGAGGAGGCTCTCCTTATACGAACCCAGAGAAAGTTGACATAAAAAACTTTGTTAATTCCCTCTCTGACACAAGTCCTTCATCATTTGCCCAGCAATTCATATCAAGGGATGGGGTCCTCAATGCCCGGGCTCGTGTCCTTGGTGGTGGATCTGTCTTGAATGCTGGGTTCTACTCACGGGCTAGCTCCAAGTACATAAGGGATTCTGGTTGGAATGAAACTTTGGCCAAGAACTCATATGAATGGGTTGAAAAGAAGGTGGTTTTTAAGCCTCCAATGCTGCAATGGCAATCAGCAGTGAAGGATGGGCTGCTAGAAGCAGGGGTGTTACCTTACAATGGTTTTACTTTTGATCACTCTTATGGGACTAAGGTTGGGGGGACAATTTTTGATAAGGAGGGTCACAGGCACACTGCAGCTGATTTGTTAGAGTATGCTGATCCAAGAAGGATTTCTGTTTATCTGCACGCCACAGTGCAGAAGATACTATTTAAGTATAATGGAGAAAAAAGGAGGCCACAAGCTTATGGAGTAATTTTCAAAGATGCATTTGGTATCATACATAGAGCATACTTAAGCTCGAAACCCAAGAATGAGATAATATTATCAGCTGGTGCAATTGGAAGCCCACAGCTGCTGATGCTGAGTGGCATTGGTCCTGCTAACCATCTTCAGGCTCATGGAATCCAAGTGGTCTTGGATCAGCCTTTGGTGGGTCAAGGGATGGCAGATAATCCAATGAATCTTCTCGTTGTTCCTTCCCCTCTACCTGTTGAAGTCTCTCTCATCCAAACAGTGGGCATCACTAAGTTTGGTAGCTTAATTGAAACAGCCAGCGGATTGAGCTTTGGCCACTCTTGGTCTGAAAGGCTTCAAGGGATATTTGAATTTGTGTCAAACCAGAGTGGCCAACCCTCCATGTTTCCCTCAGAAGTCAAGGAAAGTGTTGCAGACACCATTAAATCTTTAGCCATTAATCCAATTCTTAAAGGAGGAGTCATACTTGAAAAGATAATGGGACCACAGTCTACGGGTCACCTTGAGCTCCTAACCACTAGTCCCGATGATAACCCATCAGTTACCTTCAACTATTTCAAGGATCCACAAGACTTGAGGATGTGTGTGGAAGGCATGAAAACCATCATAGATGTGATAAACTCAAAAGCATTCTCAAGATTCCGCTATCGCAACATGCCGGTCCAAACTCTAATAGACTTGATGTTGCACTTGCCAGTTAACTTGAGGCCAAAACATCCTAGTGCTGCATTTTCTTTGGAACAGTATTGCATAGACACTGTCCTAACAATTTGGCATTACCATGGAGGCTGCCAATCTGCTAAGGTTGTTGATCATAATTATAAGGTTATTGGTGTGGAAGCTCTGAGAGTAATTGATGGATCCACTTTTTATCGCTCACCGGGGACTAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAGATTATAAAGAAAAGATTCTTCCAGGGGCGGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00529	84689	87828	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000529s00019347.1	PF00732.14	GMC_oxred_N	46	320	1.20E-30
Glyur000529s00019347.1	PF05199.8	GMC_oxred_C	415	560	2.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.573
SRR1783600	control	4.569
SRR1783602	moderate drought stress	3.575
SRR1811619	moderate drought stress	3.453

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.628
DRR006520	Root Summer glycyrrhizin high producing strain	1.577
DRR006521	Root Winter glycyrrhizin high producing strain	0.015
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.821

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.469
SRR2868004	Drought Stress (root)	0.992
SRR2967015	Control (root)	0.221

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.751
SRR9715740	Leaf	6.353
SRR9715741	Leaf	3.278
SRR9715739	Root	1.617
SRR9715742	Root	4.941
SRR9715743	Root	4.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.059
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.173
SRR8749030	Uninduced	0.036
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.979
SRR8400027	Control - Root	0.328