Gene detail information of Glyur000529s00019346 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52790.1 | 2.00E-26 | peptidoglycan-binding LysM domain-containing protein |
| NR | AFK49092.1 | 7.10E-52 | unknown [Lotus japonicus] |
| trEMBL | tr|I3T9A0|I3T9A0_LOTJA | 3.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:AFK49092.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00529 | 79899 | 80252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000529s00019346.1 | PF01476.15 | LysM | 63 | 104 | 8.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.387 |
| SRR1783600 | control | 5.439 |
| SRR1783602 | moderate drought stress | 7.972 |
| SRR1811619 | moderate drought stress | 8.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.603 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.136 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 278.264 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 271.348 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.620 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.917 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.570 |
| SRR2868004 | Drought Stress (root) | 40.493 |
| SRR2967015 | Control (root) | 34.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.169 |
| SRR9715740 | Leaf | 7.196 |
| SRR9715741 | Leaf | 23.874 |
| SRR9715739 | Root | 21.378 |
| SRR9715742 | Root | 43.622 |
| SRR9715743 | Root | 43.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.867 |
| SRR8749028 | MeJA induced 9h | 203.294 |
| SRR8749029 | MeJA induced 9h | 59.072 |
| SRR8749030 | Uninduced | 266.083 |
| SRR8749031 | Uninduced | 123.087 |
| SRR8749032 | Uninduced | 50.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.882 |
| SRR8400027 | Control - Root | 12.718 |