Gene detail

Gene detail information of Glyur000529s00019345.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12580.1	2.00E-136	phosphoenolpyruvate carboxylase-related kinase 1
NR	XP_004496616.1	0	PREDICTED: calcium-dependent protein kinase 4-like [Cicer arietinum]
COG	YP_007162414.1	5.00E-29	serine/threonine protein kinase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|A5A7I7\|CDPK4_SOLTU	3.00E-91	Calcium-dependent protein kinase 4
trEMBL	tr\|G7IC06\|G7IC06_MEDTR	0	Calcium-dependent kinase {ECO:0000313\|EMBL:AES62575.1}

Sequence

Transcript Sequence

>Glyur000529s00019345.3
ATCAGCTGATTTTGAGGAGGGAGTGTTCCAAGGGTCAAACTTCCATTTAGGGGTTCTGTGCTGTCTCATTCTCTCCTACTCTTCAGCTTGGCATTCCGTGCTTTACAGTTATAGTGAATGTCTTTGTCAAACATTCAATCCATTTGAGCTTCTTCAAGGATTTTGACCTAAAGTGGGGCTTTTGGTGGATGGCAGTGTAAACAAGAAGATCAAGTTTGACACTTGTTTTAGTAATCTTATTTTGTCGAGGTGGTGGTCCCTATCTCCNGAACCAGGTCTTTGAGAAAGAGAATTCTTAGGGTAAATTGCCTGTTACTGGGTTTATTGAGTGAGGGAAAGAAAATTGTTATGGCTGTTGCCAATAGCAACAACAGCAGTGAACCTTCAACTTCATACAATTGTTACAAAGTAGTAAGCTTGACTGAAACCATATTAGATGCAAAACAAACTTCTAATTTGAAAGAACGATACATTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATCAGAGCATGCACTGACAAACTGACCGGAGAGGTTTTGGCTTGCAAATCAATTGCTAAAGATAGATTAGTTACTTCAGATGATATGCAAAGTGTTAAGCTTGAGATTGAGATAATGGCCAAGTTATCTGGTCACCCTAATGTTGTAGATCTCAAGGCAGTGTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACCTGTTAGAGAAGCATGGGAGGTTTCCTGAATCTGAAGCCAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGGGATTTGAAGCCTGAAAACATTCTCTTAGCAACTAAATCATCCTCATCTCCAATTAAATTGGCTGATTTTGGGCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCATGGGTTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTATTGGCAGGTTCATATAACCAGGCTGCTGATATTTGGAGTGCAGGGGTTATTCTTTACATTCTAGTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTCACNAATATTTGAAGCTGTCAAGGCTGCTGACTTAAGGTTCCCATCTGAACCTTGGGATCACATTTCTGAATTTGCAAAGGATTTGATTAGGGGAATGCTCTGCATAAAACCTTCTCAAAGGCTCACTGCCCAGGAGGTTTTGGACCATTGCTGGATGGAAAACAATCCAACAAATCCTGAACAACTAAGTGAACATAAAATCGGAAGTTGTGGAGAGAGGGATGTCGATTGCAACTCATTCTCTGACTCGTTTATGTCCAGGAATCTGGACATCAGCTTTGGTGCTGGATCGCCTACATGTGATGCTCAATCACCTACATTCACATGCAAATCATCATTTTCTTCCATTTTTGCGGAACCGGTGACTCCTTGTTCTGTTTATGGCGGGTTTTCATTTCAGAGCTCAGGTTGTTCCACTGATTTGGAATTTTCTTCTCCCATTCCCTCAATGCCTAGCTTTGCATTTCTCAGCCCCAGTCCTGTTGTTGAGCAAAAGAGTCATATACTAGAGTTCTCGTCTAACACGTCAGAAGTAAATGCAATTGTTGGAGATTCTCCCCTTTGCTTTGAAGANGATGTTAAAGAAATGGATCACAAGCCTGGAGAGACTAAAAGGGCATGTGCAACAAATGGTAACAGGGCATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTCGGTGACCNCGAGCAACTTGATCTTGTGGTGACTGAATCAATCATTCGTTGGTTATCATGCACACAATTTCCTACATCACCAAGATCATCTTTTGTCTGTTGAAATGATAGATTTCTGGACAGATTAATTGAATGGCTCGACACGGTGTCTAAATTCGGCATACTGGTTCAAGTTTTGCCTGCCTAACACATTGTACATGTTTCCTGAATTTGTAGTGTTGTTGCTATCTTCTGGTTTGTGTGAGTTGTGGTTCATATTTTGTGGCAGTTTAACGATGTTGTGCTTCAGTTATGCTGTGGCTTCTAATTGTTCATCATTGTTGTGTCCTTTTCATCTTCATGTTGATAATTACCACGAGTAACAGGAATTCCACCTGGTTTGTAAGAGAGGTTTGTATCTTGATGGTACTCCAGTTAGCTTGGTGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00529	71884	77141	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000529s00019345.3	PF00069.20	Pkinase	42	299	2.40E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.913
SRR1783600	control	7.917
SRR1783602	moderate drought stress	10.665
SRR1811619	moderate drought stress	10.600

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.822
DRR006520	Root Summer glycyrrhizin high producing strain	12.495
DRR006521	Root Winter glycyrrhizin high producing strain	40.460
DRR006522	Root Winter glycyrrhizin high producing strain	37.964
DRR006523	Root Summer glycyrrhizin low producing strain	16.478
DRR006524	Root Summer glycyrrhizin low producing strain	16.424
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.493
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.226

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.064
SRR2868004	Drought Stress (root)	28.034
SRR2967015	Control (root)	36.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.267
SRR9715740	Leaf	21.611
SRR9715741	Leaf	30.467
SRR9715739	Root	9.203
SRR9715742	Root	17.737
SRR9715743	Root	16.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.102
SRR8749028	MeJA induced 9h	20.816
SRR8749029	MeJA induced 9h	12.439
SRR8749030	Uninduced	16.871
SRR8749031	Uninduced	16.908
SRR8749032	Uninduced	17.286

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.657
SRR8400027	Control - Root	23.366