Gene detail

Gene detail information of Glyur000529s00019344.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)
NR	XP_007143365.1	hypothetical protein PHAVU_007G066400g [Phaseolus vulgaris]
COG	YP_632631.1	valyl-tRNA synthetase [Myxococcus xanthus DK 1622]
Swissprot	tr\|P93736\|SYV_ARATH	Valine--tRNA ligase
trEMBL	tr\|V7BC06\|V7BC06_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW15359.1}

Sequence

Transcript Sequence

>Glyur000529s00019344.1
CTCGCAGACAGACGCAGGTTTTGCAGTCCTAGAAAAAGACATTGTTACTTGTTAGTTTACCTTACCATACCTAGGTTTGCNTTCTGACTCTGTTTACTATCCATTTTGCTAGAGCCGTTATTTGATTTGCCTACGCAGACTCCATACGCTGAAGAATCCCCACTGTTCTCCAATGGAGTCCTCTGATAACAAGAAAGAGCAAGTGCCACCTGCACCCGAAGACCCCGAGAAGAAAAAGAAAAAGGAGGAAAAGGCAAGAGAGAAGCAATTGAAGAAAGAGAAGTTTCTTCTTAAGCAAGCTGAGCGTCAGCAACAAGTGCAACAATCATCCAATGCCTCTAAAAAGAGTGAGAGGAAAAATGTGAAGCGTGGTGCAGAGGATGAGAATCCTGAAGATTACATTGATCCTGAGACTACATTGGGTGATAAGAAACAAATGGCTCGGCAAATGGCGAAACAGTATAATCCAACTGCCGTGGAGAAATCGTGGTACGAGTGGTGGGAGAAATCAAGGTATTTTGTGGCAGATGCTAGCAGCTCCAAACCACCTTTTGTAATTGTTTTGCCTCCACCAAATGTAACTGGTGCTCTCCATATAGGTCATGCTCTAACAGCTGCAATAGAGGATACAATGATTCGTTGGCGAAGAATGTCTGGATACAACGCTTTGTGGGTGCCTGGGATGGATCATGCTGGGATTGCTACACAGGTAGTTGTGGAGAAAAAGATAATGCGTGAAAAGCAACTAACCAGGCATGAACTGGGCCGTGAAAAATTTGTCGCTGAGGTTTGGGAATGGAAAAACAAATATGGGGGCACAATATTGCAACAATTACGCCGATTAGGAGCCTCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAGAAGATCTAAGGCTGTGACAGAGGCTTTTGTGCGACTTTACAAGCAAGGCCTTATCTATAGGGACCTACGTTTAGTGAATTGGGATTGTGTGTTACGAACGGCAATATCTGATATTGAGGTGGATTATGTTGATATCAAAGAAAGGACCCTACTAAAGGTTCCAGGATATGACAAACCTGTTGAATTTGGAGTTTTAACAAAATTTGCATACCCTTTGGAAGGGAACCTTGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGTGACACTGCTATTGCCATACATCCTGCTGATGACAGATACAGCCAATTTCATGGAAAATATGCTATTCACCCATTTAATGGCAGAAAACTTCCTATAATTTGCGATGCTATTCTTGTTGATCCAAAGTTTGGGACGGGTGCTGTTAAGATTACACCTGCCCATGATCCAAATGATTTTGATGTTGGAAAACGTCACAACCTTGAATTCATTAATGTTTTCACTGATGATGGGAAAATAAATTCCAATGGTGGCTCTGAATTTTTTAACATGCCACGATTTAAAGCTCGAGAAGCAGTAACAGAAGCATTACAGAAGAAGGGCCTTTATAGAGGTTGTGAAAACAATGAGATGCGCCTTGGTGTATGTTCAAGAAGCAATGATGTTATAGAGCCCATGATAAAGCCACAGTGGTATGTCAATTGCAATGATATGGCAAAGCAAGCTCTTGATGCTGCCACGGATGAGGAAAACAAAAAGCTAGAGATTGTTCCAAAACAATATTTGGCTGATTGGAAGAGATGGCTTGAAAACATACGTGATTGGTGCATTTCACGGCAGCTATGGTGGGGTCACCAAATACCTGCATGGTATGTGACTTTAGAGGATGACATACTGCAGGAATTTGGTGCTTACAACGATCATTGGGTAGTGGCAAGAAATGAAGAGCAGGCCCGAGACGAGGCTAGCCAGAGGTATAACGGAAAGAAGTTTCGTTTAAGCCAGGACCCTGACGTTCTGGATACATGGTTTTCTTCTGGTCTGTTCCCGTTAACTGTACTGGGATGGCCTGATGACACAGAAGACCTGAAGGCATTCTATCCAACTTCTGTTTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATGAAGTTGGGTGGTGACGTGCCTTTTAAAAAGATTTATTTGCACCCCATGATTCGTGATGCACATGGGCGCAAGATGTCCAAGTCCTTGGGGAATGTTATTGATCCCATTGAAGTGATAAATGGGATAACACTGGAAGGTCTACATAAGAGGTTAGAAGGAGGTAACCTTGACCCCAAAGAACTAGCTACTGCCATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATCAATGCGGTGCTGATGCTCTCCGTTTTGCACTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAATTATGGAATGCAGTACGATTTGCTATGAGCAAGCTCGGAGATGATTACATTCCTCCTGCAAATTTGACTCCAGATGTTATCCCATTTAGCTGCCAGTGGATACTGTCTGTGTTGAATAAAACCATGTCCAAAACAGNAAAGTCTCTAGAATCACTAGAGTTCTCACAAGCTACCACTGCGGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTATTCATTGAAGTGATTAAGCCGTACTTTGCTGGTAACGATCCCAAGTTTGTTTCGGAAAGGGGCTTTGCACAAGATACTTTGTGGTTTTGTCTTGACAATGGCCTGCGATTGCTTCATCCTTTTATGCCTTTTGTAACGGAAGAATTGTGGCAACGCCTTCCTTCACCCAAGGAATGTAAGAGAGCAGAATCTATCATGATATGTGATTATCCATCAGCTATAGAGAGCTGGACTAATGAAAGGGTAGAGAATGAGATGGACCTTGTTGAGTCTACTGTTAAGTCTCTCAGGTCACTGGCAAAAGAAAGACGTGACAGGCGACCGGCTTTTGTTCTCTGCCGAACACAGGTGGTGGCAGAGATTATTAACAGCCATCAACTNGAGATTGTAACACTGGCTAATCTATCCTCTTTGACTGTAATTACCGAAATTGAAGCCATTCCGTCTGGATATGCTGATACTGTCGTAAACGAAAGCCTTTCTGTTTATCTAGAGCTTCAAGGAACTAGTTCTGCTGAAGCTGAACTCGGAAAGATGAAGAAGATAGATGAACTGAAGAAGCAAATAGAAAGATTAGAGAAGATTATGAATGCTCCAGGTTATGAAGAGAAGGTTTCACCACAGATTCGAGCCAAGAATGAGGAGAAGCTAGAATCCCTAAAGGAGCGTTTATTGCTTGAGGAAACGGCTGGACTGAGTCTCTAGCTTCCAAGTATTGAACTTTGATGGATCATTACATGAAGCAGGCAGAAAGGTCCATCAATCTTTTTATTTTTATGGCCTAATTATTGGCCATCGTACACTATGTCTNTTGGTAAATGCAAATTTTGGTAATCTTTTGTTACAAGATTGGTGCAATTGTTTGTTCACCCTTGGTCCAGAGTCTCCAGACCTGGATTTTTTGTGAACTTTGTNTTTTCCTTTGTTGTGGAGGTTGACAATGACAATGCACTCTAATGTATTACCGGTTATTAGGAAACTCTTGTTACGGTAGAAATCTTGAAATTGGTTTGAGTTAAACAGCAATTACAAGATATGTATAACTATAATGAAGTTGCTGTCAGACCTCAGAACGGGTAATACAAATTATCATGTAGCTTAGTAGTGGTAATACTAAATTATTGGTTTAATTGCAGTTTTGGTCCTTCAAGTATCGTGATTGTGCAATTTTGGTCCCTCGAGTTTCAATTGTGCAAATTGAGNCCTCCATGTTTATCAATCGTGTAATTTTGAT

Protein Sequence

>Glyur000529s00019344.1
MESSDNKKEQVPPAPEDPEKKKKKEEKAREKQLKKEKFLLKQAERQQQVQQSSNASKKSERKNVKRGAEDENPEDYIDPETTLGDKKQMARQMAKQYNPTAVEKSWYEWWEKSRYFVADASSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNALWVPGMDHAGIATQVVVEKKIMREKQLTRHELGREKFVAEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDRRSKAVTEAFVRLYKQGLIYRDLRLVNWDCVLRTAISDIEVDYVDIKERTLLKVPGYDKPVEFGVLTKFAYPLEGNLGEIVVATTRIETMLGDTAIAIHPADDRYSQFHGKYAIHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINVFTDDGKINSNGGSEFFNMPRFKAREAVTEALQKKGLYRGCENNEMRLGVCSRSNDVIEPMIKPQWYVNCNDMAKQALDAATDEENKKLEIVPKQYLADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQEFGAYNDHWVVARNEEQARDEASQRYNGKKFRLSQDPDVLDTWFSSGLFPLTVLGWPDDTEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFKKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGITLEGLHKRLEGGNLDPKELATAIEGQKKDFPNGIDQCGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLTPDVIPFSCQWILSVLNKTMSKTXKSLESLEFSQATTAVYSWWQYQLCDVFIEVIKPYFAGNDPKFVSERGFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPKECKRAESIMICDYPSAIESWTNERVENEMDLVESTVKSLRSLAKERRDRRPAFVLCRTQVVAEIINSHQLEIVTLANLSSLTVITEIEAIPSGYADTVVNESLSVYLELQGTSSAEAELGKMKKIDELKKQIERLEKIMNAPGYEEKVSPQIRAKNEEKLESLKERLLLEETAGLSL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00529	61623	70170	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01873	VARS, valS	EC:6.1.1.9	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006438 valyl-tRNA aminoacylation

molecular_function

GO:0000166 nucleotide binding

GO:0002161 aminoacyl-tRNA editing activity

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004832 valine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000529s00019344.1	PF00133.17	tRNA-synt_1	106	729	2.20E-199
Glyur000529s00019344.1	PF08264.8	Anticodon_1	774	916	1.80E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.239
SRR1783600	control	32.216
SRR1783602	moderate drought stress	31.718
SRR1811619	moderate drought stress	31.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.946
DRR006520	Root Summer glycyrrhizin high producing strain	38.549
DRR006521	Root Winter glycyrrhizin high producing strain	33.485
DRR006522	Root Winter glycyrrhizin high producing strain	32.540
DRR006523	Root Summer glycyrrhizin low producing strain	33.583
DRR006524	Root Summer glycyrrhizin low producing strain	33.467
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.897
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.865

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.355
SRR2868004	Drought Stress (root)	60.407
SRR2967015	Control (root)	56.651

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.407
SRR9715740	Leaf	30.626
SRR9715741	Leaf	29.837
SRR9715739	Root	7.133
SRR9715742	Root	42.685
SRR9715743	Root	37.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.702
SRR8749028	MeJA induced 9h	52.469
SRR8749029	MeJA induced 9h	42.282
SRR8749030	Uninduced	20.259
SRR8749031	Uninduced	18.581
SRR8749032	Uninduced	20.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.335
SRR8400027	Control - Root	48.208