Gene detail information of Glyur000529s00019343 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51990.1 | 4.00E-45 | C-repeat-binding factor 4 |
| NR | ADL74429.1 | 9.18E-93 | CRT/DRE binding factor 4 [Medicago truncatula] |
| Swissprot | tr|Q9FJ93|DRE1D_ARATH | 4.00E-63 | Dehydration-responsive element-binding protein 1D |
| trEMBL | tr|E1AXT3|E1AXT3_MEDTR | 3.00E-93 | CRT/DRE binding factor 4 {ECO:0000313|EMBL:ADL74429.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00529 | 58811 | 59434 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000529s00019343.1 | PF00847.15 | AP2 | 45 | 95 | 8.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.151 |
| SRR1783600 | control | 0.106 |
| SRR1783602 | moderate drought stress | 0.424 |
| SRR1811619 | moderate drought stress | 0.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 416.874 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 415.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.891 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.891 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1371.584 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1357.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.823 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.830 |
| SRR2868004 | Drought Stress (root) | 16.698 |
| SRR2967015 | Control (root) | 156.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 856.772 |
| SRR9715740 | Leaf | 492.867 |
| SRR9715741 | Leaf | 715.403 |
| SRR9715739 | Root | 1253.140 |
| SRR9715742 | Root | 1740.154 |
| SRR9715743 | Root | 1696.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 513.414 |
| SRR8749028 | MeJA induced 9h | 495.854 |
| SRR8749029 | MeJA induced 9h | 298.572 |
| SRR8749030 | Uninduced | 456.561 |
| SRR8749031 | Uninduced | 125.238 |
| SRR8749032 | Uninduced | 211.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.698 |
| SRR8400027 | Control - Root | 60.797 |