Gene detail information of Glyur000529s00019342.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52020.1 | 1.00E-24 | Integrase-type DNA-binding superfamily protein |
| NR | AES62568.2 | 3.04E-53 | ethylene-responsive transcription factor ERF026 [Medicago truncatula] |
| Swissprot | tr|Q9FJ90|ERF25_ARATH | 1.00E-33 | Ethylene-responsive transcription factor ERF025 |
| trEMBL | tr|G7IBZ9|G7IBZ9_MEDTR | 1.00E-53 | Ethylene-responsive transcription factor ERF026 {ECO:0000313|EMBL:AES62568.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00529 | 45399 | 48308 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000529s00019342.1 | PF00847.15 | AP2 | 40 | 83 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.267 |
| SRR1783600 | control | 1.080 |
| SRR1783602 | moderate drought stress | 2.319 |
| SRR1811619 | moderate drought stress | 1.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.950 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.793 |
| SRR2868004 | Drought Stress (root) | 3.372 |
| SRR2967015 | Control (root) | 2.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.182 |
| SRR9715740 | Leaf | 42.350 |
| SRR9715741 | Leaf | 53.475 |
| SRR9715739 | Root | 55.430 |
| SRR9715742 | Root | 112.972 |
| SRR9715743 | Root | 88.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.475 |
| SRR8749028 | MeJA induced 9h | 23.873 |
| SRR8749029 | MeJA induced 9h | 15.186 |
| SRR8749030 | Uninduced | 14.875 |
| SRR8749031 | Uninduced | 4.484 |
| SRR8749032 | Uninduced | 7.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.950 |
| SRR8400027 | Control - Root | 2.728 |