Gene detail

Gene detail information of Glyur000528s00024898

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57030.1	0	Lycopene beta/epsilon cyclase protein
NR	XP_003533775.1	0	PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Glycine max]
COG	YP_003706080.1	8.00E-59	lycopene cyclase family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q38932\|LCYE_ARATH	0	Lycopene epsilon cyclase, chloroplastic (Precursor)
trEMBL	tr\|I1L1L3\|I1L1L3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G07590.1}

Sequence

Transcript Sequence

>Glyur000528s00024898.1
CCCAAACTGAAACTGAAACCGCTCACACACACACACACAGAGAAAGAAAAAGAGAAGTAGCTCGTCATGCTTTTGACGTCGTCGTTTTAAGACTCACAAGTTTGGAGCGGTGGCGTGAATGCCATGTTGAGAAGGAGTGATATAAAAGCAGTACCATAAATCCAAAAACGACACAACGAAAAACCCCAACGAAAACCACAATGGAGTGTGTTGGAGTGAGAAACTTGGCGGCAATGGCGTTTTGCGTGAGTCCTTCTTCGAGGTTACGGTTAAGGAGGGTGAAGCATTGGAGGAGACGAAACTCGTCGTGCGGCAACGACGTCGTTTTGCGGTCGCATTCACTGAAGGTGGAGGCCAAAGCCGGAGCGGGGAGCGAGAGTTGCGTGGTAACCACCACCACCACGACCAGAGAGGAATTCGCTGACGAGGAGGATTTCGTTAAGGCTGGTGGCTCCGAACTTGTTTTCGTACAAATGCAGCAGAATAAGTCCATGGAGATGCAATCCAAGCTTGCGGATAAGAGTAGTTGTATGTTGAGATTCTCTATGATCGGTCCTGAAAGATATTTGGATTCTATGGATGAAGTTGAGGCTCCTTCTCTGAATAAAAATGATTTGCCACCTATCTCTATTGGAGATGATATACTGGATCTCGTTGTGATTGGTTGTGGTCCGGCTGGTCTTGCTCTAGCTGCTGAATCCGGAAAGTTAGGATTAAAAGTCGGGCTTATTGGTCCGGATCTCCCTTTTACAAACAACTATGGTGTGTGGGAGGATGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGCATGTTTGGAAGGATACCATTGTATATCTTGATAACAAGGATCCCATTTTTATTGGACGTTCTTATGGACGTGTCAGTCGGCATTTGCTTCATGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCGTATCTTAGCTCAAGAGTAGAAAGGATTGTTGAGGCTAGCAATGGTCATAGTCACGTTGTCTGTGAATATGATATTGTAGTGCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAATATGAGGTTGGGGGTCCAAAGGTGTCTGTCCAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAACCTGATGGTTTTCATGGATTACAGAGACTATATGAAGCAAAACGTTCAATGTCTAGAAGCAAAGTATCCAACATTTCTTTATGTGATGCCCATGTCTCGTACAAGAGTGTTCTTTGAGGAAACCTGTTTGGCGTCAAAAGATGCCATGCCTTTTGATTTACTAAAGAAAAAGCTCTTTTCAAGATTAAATACGATGGGGATNAGAATTGCAAAAACTTATGAAGAGGAATGGTCTTATATCCCAGTTGGTGGATCCTTACCAAACACAGAGCAAAAGAACCTTGCATTTGGCTACTCTGTTGTGAGATCTTTGTCAGAAGCTCCAAAGTATGCTTCAGTAATTGCTACTATTTTGAAAGAGGGTCATACAAGGAACATTGTTACTAATGAAAGAAATAAGGAGAATCTATCTATGCAAGCTTGGAATACACTTTGGCCACAAGAAAAGAAACGGCAGAGAGCATTCTTTCTTTTTGGATTAGCACTGATTCTGCAGCTGGACATTGAGGGCATTAGAACATTCTTTCGTACTTTCTTCTGCTTACCCGATTGGATGTGGCAAGGATTTCTTGGCTCCTCTCTCTCCTCGACAGATCTTGTATTATTTGCATTCTATATGTTCATAATAGCACCAAATAACTTGAGAATGTGTCTAGTCAGACATCTGCTTTCAGATCCTACTGGGACGACTATGATAAGGACCTACTTAACGATATAGTACGTTTCTATAACTCCCCCCCCCCCCCTGTTAGGTACCCTGTATTGGGAAACAGGTTAGATTGCAATAGGAGCCATGGTAATAGAAGTTAGTAGGTTCTTGTATGTACATATATATTTTTCTAAAACCAGATCGTTCTTATGATTTTCATGTCCCTTCTGCTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00528	80851	89307	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06444	lcyE, crtL2	EC:5.5.1.18	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0016117 carotenoid biosynthetic process

molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000528s00024898.1	PF05834.7	Lycopene_cycl	150	537	1.50E-123

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.137
SRR1783600	control	0.117
SRR1783602	moderate drought stress	0.037
SRR1811619	moderate drought stress	0.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.158
DRR006520	Root Summer glycyrrhizin high producing strain	0.157
DRR006521	Root Winter glycyrrhizin high producing strain	0.781
DRR006522	Root Winter glycyrrhizin high producing strain	0.733
DRR006523	Root Summer glycyrrhizin low producing strain	0.606
DRR006524	Root Summer glycyrrhizin low producing strain	0.589
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.585
SRR2868004	Drought Stress (root)	1.536
SRR2967015	Control (root)	0.308

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.534
SRR9715740	Leaf	22.335
SRR9715741	Leaf	15.556
SRR9715739	Root	0.138
SRR9715742	Root	0.000
SRR9715743	Root	0.105

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.372
SRR8749028	MeJA induced 9h	8.715
SRR8749029	MeJA induced 9h	6.875
SRR8749030	Uninduced	6.355
SRR8749031	Uninduced	4.231
SRR8749032	Uninduced	4.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.554
SRR8400027	Control - Root	0.552