Gene detail information of Glyur000528s00024894 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12010.1 | 8.00E-156 | |
| NR | XP_003534929.1 | 0 | PREDICTED: uncharacterized protein LOC100802708 [Glycine max] |
| trEMBL | tr|I3S691|I3S691_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK35783.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00528 | 42654 | 44249 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000528s00024894.1 | PF13359.1 | DDE_Tnp_4 | 321 | 477 | 6.20E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.280 |
| SRR1783600 | control | 2.250 |
| SRR1783602 | moderate drought stress | 1.264 |
| SRR1811619 | moderate drought stress | 1.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 272.787 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 284.320 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.703 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.987 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 368.199 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 341.216 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 109.591 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 105.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.843 |
| SRR2868004 | Drought Stress (root) | 17.308 |
| SRR2967015 | Control (root) | 195.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 603.877 |
| SRR9715740 | Leaf | 500.592 |
| SRR9715741 | Leaf | 605.121 |
| SRR9715739 | Root | 468.400 |
| SRR9715742 | Root | 901.618 |
| SRR9715743 | Root | 812.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 392.408 |
| SRR8749028 | MeJA induced 9h | 281.895 |
| SRR8749029 | MeJA induced 9h | 442.438 |
| SRR8749030 | Uninduced | 168.412 |
| SRR8749031 | Uninduced | 230.819 |
| SRR8749032 | Uninduced | 288.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.011 |
| SRR8400027 | Control - Root | 116.217 |