Gene detail

Gene detail information of Glyur000527s00032550.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05610.2	1.00E-83	alfin-like 1
NR	NP_001239831.1	2.28E-171	uncharacterized protein LOC100793126 [Glycine max]
Swissprot	tr\|Q75IR6\|ALFL1_ORYSJ	8.00E-120	PHD finger protein ALFIN-LIKE 1
trEMBL	tr\|C6T7X8\|C6T7X8_SOYBN	9.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G29950.1}

Sequence

Transcript Sequence

>Glyur000527s00032550.1
GCTTTGTTGGGTAAGTGGCAGAAGTTATAGCAGCAGTAGAGGAAGCAATTTAGCAAACAAAAAATAGCGTTATTCACACACTCACAAGTCACAACCCTTTTACGTTGTTTTTCTCCTTTCTCGTGTTTTTTCCTCTGATCCTCTACACTCTGATCCCTTTGGATCCACTCTCATGGTGTCGCTCCTTCACTCTCTCTCCTTCAATTCCATCTAATTTTCCCCCTAATTCCCAATCCCTTTTCTCTTAGATCTCAATTGGGTTATGGAAATGGCTTCTAGCCCTCGTACCGTCGAAGAGATCTTCAAGGATTACAGCGCTCGAAGAACCGCCGTTGTTCGTGCTCTCACTCAGGATGTTGATGAATTTTACGGGCTCTGTGATCCAGACAAGGAGAACTTGTGCCTCTATGGACATCCAAATGAAAACTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGAGATGGCATGAACCGCAGGGACTGGCTTTCCCTGGTTGCTGTCCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGTTTAATCAATGATCTTCCCACCGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCCACAGCGGATAGTGGAAGCAAATCCCGGGGAAGCACCAAGAGGTCTAGTGATGGGCAAGTCAAAAGCAACCCAAAGTTTGCTGATGAGGGTTACGAGGAGGAGGAAGATGAGCACAGCGAAACCCTCTGTGGGAGCTGCGGCGGGAACTACAACGCGGACGAGTTCTGGATCGGCTGCGACATATGCGAGAGGTGGTTCCATGGGAAATGTGTGAAGATCACTCCTGCAAAGGCCGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATGAGGCGGGGCAGGCCTTAGGCTGTGAAATGGCAATCAATGAAGGGTATATGTCACAAAGTGAATGTATGTTTATGGATGACAAGATGCACTTTAAGATTGTTACATCACTTACAGGATTTCATTTTCATGATAGTGTCTATGTCTAATTGGCGTCTGGGATTAAGTTTATTTTCACTATGATGAATTTGTTAGCGTATGTTGCATATTTATAGAATAGAATATGATAAATTTTAATTTTAATTTGTCGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00527	82418	86315	-

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000527s00032550.1	PF12165.3	DUF3594	8	136	5.70E-76
Glyur000527s00032550.1	PF00628.24	PHD	186	233	1.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	130.027
SRR1783600	control	129.897
SRR1783602	moderate drought stress	135.335
SRR1811619	moderate drought stress	135.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	160.116
DRR006520	Root Summer glycyrrhizin high producing strain	157.569
DRR006521	Root Winter glycyrrhizin high producing strain	104.070
DRR006522	Root Winter glycyrrhizin high producing strain	101.429
DRR006523	Root Summer glycyrrhizin low producing strain	174.632
DRR006524	Root Summer glycyrrhizin low producing strain	174.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	198.929
SRR2868004	Drought Stress (root)	194.195
SRR2967015	Control (root)	215.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	119.208
SRR9715740	Leaf	142.824
SRR9715741	Leaf	143.790
SRR9715739	Root	217.840
SRR9715742	Root	169.387
SRR9715743	Root	158.078

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	260.712
SRR8749028	MeJA induced 9h	132.186
SRR8749029	MeJA induced 9h	177.201
SRR8749030	Uninduced	108.771
SRR8749031	Uninduced	88.653
SRR8749032	Uninduced	125.961

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	221.670
SRR8400027	Control - Root	226.987