Gene detail information of Glyur000525s00018814 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23220.1 | 1.00E-25 | Dynein light chain type 1 family protein |
| NR | XP_006594772.1 | 4.50E-62 | PREDICTED: dynein light chain, cytoplasmic-like [Glycine max] |
| Swissprot | tr|Q39580|DYL1_CHLRE | 3.00E-13 | Dynein 8 kDa light chain, flagellar outer arm |
| trEMBL | tr|I1M392|I1M392_SOYBN | 2.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G35300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00525 | 88726 | 89417 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000525s00018814.1 | PF01221.13 | Dynein_light | 49 | 137 | 3.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.061 |
| SRR1783600 | control | 0.062 |
| SRR1783602 | moderate drought stress | 0.128 |
| SRR1811619 | moderate drought stress | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.617 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.564 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.092 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.264 |
| SRR2868004 | Drought Stress (root) | 0.582 |
| SRR2967015 | Control (root) | 0.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.258 |
| SRR9715740 | Leaf | 2.425 |
| SRR9715741 | Leaf | 8.196 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.499 |
| SRR9715743 | Root | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.367 |
| SRR8749028 | MeJA induced 9h | 47.543 |
| SRR8749029 | MeJA induced 9h | 67.201 |
| SRR8749030 | Uninduced | 24.567 |
| SRR8749031 | Uninduced | 5.954 |
| SRR8749032 | Uninduced | 13.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.522 |
| SRR8400027 | Control - Root | 0.048 |