Gene detail

Gene detail information of Glyur000525s00018813

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15360.1	1.00E-52	thioredoxin M-type 4
NR	XP_006594773.1	6.23E-98	PREDICTED: thioredoxin M4, chloroplastic-like [Glycine max]
COG	YP_007162724.1	2.00E-47	thioredoxin [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q9SEU6\|TRXM4_ARATH	2.00E-65	Thioredoxin M4, chloroplastic (Precursor)
trEMBL	tr\|I1M393\|I1M393_SOYBN	2.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G35310.1}

Sequence

Transcript Sequence

>Glyur000525s00018813.1
CTCACAATAATATTATCATTTTCTTTCCGAAACAAAACAAAAACAAAAAACAAAAACATTTCTTCTACTGTCTCTCTCACTTCTCCATTCATCACAACACTTTCCAATTTCTCATTTCCACACGCTCTCTTCTCATTCTGGAGCTGCGATTCTCTGCATCCATGGCCACCGTGCAACTCGAACCCTTCTCCCTCATTCGATCCTCCACGGTCCCTCCCGTCGCCTTCTCTCCTCCGATCGCCGCCTCCTCCATCTCCGGCCGCCGGAGCTTTGCCAGGTTGCCGCACTACACCGGCCTCAAGCTCCGACCCCTCGCCGCGACTCGTTCACTGAGTCACACCGCCTCGAGAATCGTTCCTCGTGGTGGAGGCGTCGTGTGTGAGGCCCGAGATAGTACTGCAGTTGAAGTGGCTTCTATTACTGATGCAAATTGGCAATCGCTTGTCCTTGAATCCGAGACTCCTGTATTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGTATGATCCATCCGATAATCGATGAGCTGGCAAAGGAATATGCCGGTAAGCTTAAGTGTTACAAACTCAATACTGACGAGAGCCCTTCAACTGCTACTCGGTATGGGATTCGAAGTATTCCAACTATCATTATCTTCAAGGATGGTGAGAAGAAAGATGCAGTTATTGGTGCTGTGCCCAAGACAACATTGACCACAAGCATAGAAAAATTCCTGTGAGATGGTAAGCAAAGAAGGCTTCGGCTGAAAGTAAAGCTATTTTTCCCTTTAGCTTCCTCTCGTTAAGCCAAATATCTCAAGTTTGGATGATTTGCTTTCTAAGATAATCATTTAAGGTCCTGTATAGTCATGGGATGCAACCATATTGTTTATTAGATAATTATAGTGACCAATATGCTGCGTAAATTTGCCAATCTATTATAGCAAGTTGAAACCCATTTTACATCTTGGGCATCTTTTTGTTTTCATCTTTCACTGAACATTGTAGGAATGGGTATAAAACAAATTAGATATTTACAATAAAAAGTTCTGAGGCCTAGATGTAGTGGTTTGTTTCGTAACATGGTTGCCGCTGCTTGGATATATCGCAGCATGAGTGTTGTTCTGATTGAGCGATGACTTAGACAAGCTCCTTCGCCTCTTAGGCTCCGAGCTTGGGGGGTATATGCCGTTTTGACCGGGCTACAATGAAAGATTTTGATCTCTTTATACCATGAGTAGACCAAAAATTACNAATGTACATAACGGCTCATCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00525	84770	87532	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000525s00018813.1	PF00085.15	Thioredoxin	83	184	7.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.422
SRR1783600	control	76.118
SRR1783602	moderate drought stress	52.030
SRR1811619	moderate drought stress	50.228

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.522
DRR006520	Root Summer glycyrrhizin high producing strain	47.234
DRR006521	Root Winter glycyrrhizin high producing strain	36.637
DRR006522	Root Winter glycyrrhizin high producing strain	35.598
DRR006523	Root Summer glycyrrhizin low producing strain	43.417
DRR006524	Root Summer glycyrrhizin low producing strain	44.825
DRR006525	Leaf Summer glycyrrhizin high producing strain	129.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	127.844

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.306
SRR2868004	Drought Stress (root)	41.607
SRR2967015	Control (root)	34.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	220.242
SRR9715740	Leaf	241.693
SRR9715741	Leaf	240.882
SRR9715739	Root	57.648
SRR9715742	Root	51.861
SRR9715743	Root	51.576

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.552
SRR8749028	MeJA induced 9h	28.383
SRR8749029	MeJA induced 9h	25.117
SRR8749030	Uninduced	18.700
SRR8749031	Uninduced	5.421
SRR8749032	Uninduced	9.418

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.375
SRR8400027	Control - Root	67.327