Gene detail information of Glyur000525s00018810 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02130.1 | 1.00E-07 | low-molecular-weight cysteine-rich 68 |
| NR | XP_003543246.1 | 5.85E-46 | PREDICTED: defensin-like protein-like isoform X1 [Glycine max] |
| Swissprot | tr|P18646|DEF_VIGUN | 1.00E-47 | Defensin-like protein (Precursor) |
| trEMBL | tr|C6T0M2|C6T0M2_SOYBN | 2.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G35320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00525 | 72657 | 80315 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000525s00018810.1 | PF00304.15 | Gamma-thionin | 29 | 75 | 3.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.069 |
| SRR1783600 | control | 0.020 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.606 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 410.989 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 401.073 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.702 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.027 |
| SRR2967015 | Control (root) | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.450 |
| SRR9715740 | Leaf | 26.166 |
| SRR9715741 | Leaf | 38.691 |
| SRR9715739 | Root | 0.750 |
| SRR9715742 | Root | 0.829 |
| SRR9715743 | Root | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.149 |
| SRR8749028 | MeJA induced 9h | 12.577 |
| SRR8749029 | MeJA induced 9h | 0.336 |
| SRR8749030 | Uninduced | 7.608 |
| SRR8749031 | Uninduced | 0.283 |
| SRR8749032 | Uninduced | 0.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.276 |
| SRR8400027 | Control - Root | 3.475 |