Gene detail information of Glyur000525s00018806 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15380.1 | 0 | Plasma-membrane choline transporter family protein |
| NR | XP_003540458.1 | 0 | PREDICTED: choline transporter-like protein 2-like [Glycine max] |
| trEMBL | tr|I1LUZ7|I1LUZ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00525 | 39347 | 45035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000525s00018806.1 | PF04515.7 | Choline_transpo | 322 | 669 | 3.60E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.745 |
| SRR1783600 | control | 50.075 |
| SRR1783602 | moderate drought stress | 38.030 |
| SRR1811619 | moderate drought stress | 37.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.433 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.579 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.918 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.035 |
| SRR2868004 | Drought Stress (root) | 17.278 |
| SRR2967015 | Control (root) | 21.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.637 |
| SRR9715740 | Leaf | 11.000 |
| SRR9715741 | Leaf | 14.795 |
| SRR9715739 | Root | 31.568 |
| SRR9715742 | Root | 25.444 |
| SRR9715743 | Root | 25.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.510 |
| SRR8749028 | MeJA induced 9h | 13.148 |
| SRR8749029 | MeJA induced 9h | 5.246 |
| SRR8749030 | Uninduced | 1.261 |
| SRR8749031 | Uninduced | 0.207 |
| SRR8749032 | Uninduced | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.584 |
| SRR8400027 | Control - Root | 34.389 |