Gene detail information of Glyur000524s00019141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42500.1 | 2.00E-43 | Disease resistance-responsive (dirigent-like protein) family protein |
| NR | XP_003625315.1 | 5.17E-105 | Disease resistance response protein [Medicago truncatula] |
| Swissprot | tr|Q9FIG7|DIR2_ARATH | 1.00E-53 | Dirigent protein 2 (Precursor) |
| trEMBL | tr|G7KWC3|G7KWC3_MEDTR | 2.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK36157.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00524 | 143658 | 144140 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000524s00019141.1 | PF03018.9 | Dirigent | 13 | 159 | 2.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.370 |
| SRR1783600 | control | 9.368 |
| SRR1783602 | moderate drought stress | 8.766 |
| SRR1811619 | moderate drought stress | 8.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.067 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.709 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.639 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.061 |
| SRR2868004 | Drought Stress (root) | 60.907 |
| SRR2967015 | Control (root) | 47.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.200 |
| SRR9715740 | Leaf | 16.622 |
| SRR9715741 | Leaf | 33.779 |
| SRR9715739 | Root | 34.283 |
| SRR9715742 | Root | 90.224 |
| SRR9715743 | Root | 75.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.832 |
| SRR8749028 | MeJA induced 9h | 25.674 |
| SRR8749029 | MeJA induced 9h | 17.727 |
| SRR8749030 | Uninduced | 71.511 |
| SRR8749031 | Uninduced | 18.814 |
| SRR8749032 | Uninduced | 41.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.682 |
| SRR8400027 | Control - Root | 22.927 |