Gene detail

Gene detail information of Glyur000524s00019121

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G06680.1	spindle pole body component 98
NR	XP_004493606.1	PREDICTED: gamma-tubulin complex component 3 homolog isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FG37\|GACP3_ARATH	Gamma-tubulin complex component 3
trEMBL	tr\|V7CYH3\|V7CYH3_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW34340.1}

Sequence

Transcript Sequence

>Glyur000524s00019121.1
GTAATAACCAGCCTCACCACTAAACAAAAATCATTTCCGCGCCCACAAAAAAAATCAAAAAAAGCACTCCTTCCTCACTCTCTTCCCCACCCCACCCCACCCCACACTCACTCACTCCGTTGAAAAATAAAAGGTTACCGTCTGGAAAAGCCTGCTACACAGTGGGTGAGTAAGACGACGGCGTTTCCCCAACGATGGACGACGAAGAAGAGCAGCAGAAGCTTCCAGATCTGGTAAAGGAACTAGTCCACCGCTTACTGAGTCAAAACCTCCCNCCAAATTCCCCACCGCTAAACCCTAACTCCCCGGAGTTCAAAAACTCCCTCCGCTACGCCCTCCGCATCCTCTCGAGCCGCCTCACTCCCTCCGTCGCCCCCGACGCCGCCGCCATCGCCGAATCCATAAAGCGCCGCCTCGCCACCCAAGGCAGGTCCTCCGAAGCCCTCTCCTTCGCCGACCTCTACACCAAGTTCGCCTCCAAGGCCACCTTCGTTAACAACAAGTGGGCCCTCCTCTACCTCCTCAGAGTCATCTCCGAAGATCGCAAATCCCAATTCGATTCTCCCTCCTCCATTCTCCTCCCCAACCTCACCACGCGCCACGCGCCCCACCACGACAAGGGATGGAACGACGGCGTTTTGCTCCTCGCCAAGGATCCCGAGAACCGCCGCGACATCGCGTTCCGCGAGTTCGTGAATCTCGTCAAGGAAGAAAACGACGTCACCGAGGAGGCTCTCGTCACCGACGTGCTCTATGCCTGTCAAGGAGTTGACGGCAAGCACGTGAGATTCAACGCCGAGATTGACCGTTACGCTTTGTCGGATTCCGTTAGGGTTCCTAGGGCCACNAAGAGTATGGTTCACAAGCTCTGTGAACTTGGGTGGTTGTTCAGGAAGGTTAGCGGTTACATACGGCAGAGCATGGATCGTTTTCCGGCGGAAGATGTGGGAACCGTTGGGCAGGCCTTTTGTTCTGCATTGCAGGATGAGTTGAGTGAGTATTACAAGTTGTTGGCGGTGCTCGAGGCTCAGTCCTCGAACCCGATTCCTCTTGTGTCGGAATCGGCGAGCTCCGGGAACTACCTTTCGCTTAGGAGATTGGCCGTTTGGGTCGCGGAGCCAACGGTGAAGATGAGGTTGATGGGTGATTTGGTTGATAGGTGTAGGGTTTTGCGCGGTGGGGCGATGGCCNGCGCGATCCATTTGCACGCCCAACATGGGGATCCGATGGTGCACGAGTTCATGAAGAGGTTGCTTCAGCGTGTGTGTTCCCCTCTTTTTGAAATGGTGAAGAGGTGGGTTTTGGAAGGGGAGTTGGAGGATATATTTGCGGAATTCTTCATTGTTGGGCAGCCGGTGAAGGCTGAATCCCTTTGGAGAGAAGGGTATAGGCTCCATGATGCCATGCTCCCTTCCTTCATTTCGGCTTCTCTTGCTCAGCGGATTCTGAGGACTGGGAAGTCCATCAATTTTCTCCGCGTTTGCTGCGAGGATCGCGGCTGGGCTCGTGCCGCGACTGAGGTTGCCGCTGATACGGGAGCNGCGGCGAGACGGGGTGGTTTTGGTTATGGAGAAACTGATACCCTTGAGTCCTTGGTTGATGAGGCTGCTAAAAGAATTGACAAGCATCTGTTGGATGTGATTTACAACAGGTATAAATTCAAAGANCACTGTCTTGCGATTAAGCGGTATCTGTTGCTTGGCCAAGGTGATTTTGTGCAGTATCTGATGGATATCGTTGGGCCTGAGCTTTCTGAGCCGGCTAACACTATAAGCTCTTTCAAACTCTCGGGATTGCTGGAAACTGCGATTCGGGCGTCCAATGCTCAGTATGATGACCCTGACATTTTGGATAGGCTCAGGGTCAAAATGATGCCACATGAAAGTGGTGATAGGGGCTGGGATGTATTCTCACTGGAATATGATGCAAGAGTTCCACTAGATACAGTGTTCACAGAGTCTGTGATGGTGAGGTATTTAAGAATTTTCAATTTTCTGTGGAAGCTTAAAAGAGTAGAGCATGCACTAATTGGTGCCTGGAAGACCATGAAACCAAACTGTATAACTTATAAATCCTTTACTAGATTGCAAGATGCAGTTAAAATAAAGTTAGTTTCGACATTGAGGCGCTGCCAGGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTGCAATACTATATAATGTTTGAAGTCTTGGAGGTGTCATGGTCAAACTTTTTAAGTGAGATGGAAGTAGCCAAGGATCTTGACGATCTACTTGCAGCTCATGAGAAATATATGCATTCAATTGTAGAGAAATCTCTCCTTGGGGAGCTTTCCCAGTCCCTTTACAAGTCCCTATTAGTAATATTTGATCTTATATTACGCTTTCGGAGCCATGCGGATCGGTTGTACGAAGGTATCCATGAGTTGCAAGCAAGAATCACGGAATCCTCTCGAGACCAGAATAAATCACGAAAGCAACTGAAGGATAAGTCTGCGGAACAAGGATCCTGGATTGCTGATGGGAGGAAAGCCCTAACACAACGTGCTGGTGAATTTCTTCAAAATATGGAGCAAGATCTGGATGCAATTGCTAAGGAATATTCATCATTGCAAGAGGAATTCATTTCTCAGTTGCCTGTACAGCAGCATGTTGATCTTAAGTTTCTCTTTTTCCGTCTTGACTTCAATGAATTTTATAGGCGGTTGTTTCCTAGCATATAGGAAATTTGTAAATATGGCTGAGGGTCAGGTTGAAGCATTGCTTATTCGAGAAGATAAGGCATTAAGAAAGCTTTGCAAGTAGCTAACTTCTATTGTGTGTTTGAGTGGAACAATTCTATTGGTGCTAACTTCCTTCAGGCCAACCATTCCATGGCTCATAATTGACTAAAGGTAATCATTTTTTGTGGTTTGCAAGGTAGTTTGGCAGATTTGAAGCTATTAATATTCTGATTGGATGCTTGACGTGAGTAATACACACGTAAGTATCTGAATATCTGATGATTTGGTTAGTGTTTTCGGCAACTTTTGCAAGCTGTGCTTTCAGAGATTGTTCATCTAGGTCATAGATTTTGTATTGGTTGAATGAAAATGGGTGTCTGAAAATCTAATTTTTGCATATTCTCGTATTACTTCTGGTTTACTGTCTCTTCTCACTCTGCAGAGTGCTTGAATTTTTGCCTTGTGGCGATTTAAATAAAGTCACAGGTGAATCAAGTATCAATGTGCTTGCTTTGTTGTTCAATATGCTTTATACTTGTTTAAGGGAATGAAGGAGCTTCTTTTTTATTTTCTGTTGGCTCAGTCTCTGTAATTAAAGAGTGAAGCCTTATTTTGTTATTTTAATGATGCGACACATGAATAATAGAGCTTATCATTTGAGTAATTGCTTGGGAAAAATGCTTAACTGCTCAAGTATTAAGGGGACCCAGCTTTNTTTTTAGACTGGGCCAAACAATTTTTACAAAAGCTCTTAAAAAATAAGTGGCTTATTTTTAAAGAAGAAAATGCACAAAAAATAGCTTTTAAAAATGCTAATATGATTAGCTTATTTTAAGCTTGTCTAGAGCTTATTTTTAAAAGGTATCCTCTTCAAACCCGTCTGTGCTTCAAATCCCAATTGTTTTACTTTTCTTGTCCACCCTCACTGTCTCCCATTCTTGGGACTACATTCATTCGCAACTTCCACACACTGCTGCACCTGGTGCTTACAGCCACTGCTTGGAGTTCTCTTCGTTGTGCATGGCCGTCAGAGGCTAGTCCTGGTTGCCACCTTGTCAATCTCATTCCTCTTCTGCAGAGGTAAGGGTTATGAGTATATGCTGTAATAGATACAATCAATTGGTGCCAGAAGGTGGGGTTGGTTGGGGCAATGTTGGCCGAAAGAACCTTCCTTTGTTCATTCCCTGCGAACCCAACAACCTTCTCCATGAATGCCGTGATCTGCAAGAGGCNTGACTTGAAGTGTTTTCAAAAATCATTTGGCAGCTCTTTTGTTTTGTCTCTACTTGTGGCTTATAAACCTTATGTTGAGAGTGAACATGTGGTTTTCTTGGACGAGCATAGGTGAACCATTAGAATAGATGACCTCAAAAATTCTAAAGGCGGCTGGCCTATATAAGGTCAAGTGATCCAGAAGGTTTCCTTGTATCAAATGAGTATTTTTTCTTCTGGTTTTTCAACTGTGAATGATATTTGATGTCATTGAAGTTTTGCAAGTGTTATGTAGCCTGCTTACTCATAGTTTGCTTCTTGTGGCGGAGTTTATTAATTAATAAATATTATAATCAGGTTTACCTCTTTCATGTTTATAATTTTTTGTACTTTGATACCTTGTTTCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00524	33509	38020	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000226 microtubule cytoskeleton organization

GO:0007020 microtubule nucleation

cellular_component

GO:0000922 spindle pole

GO:0005815 microtubule organizing center

GO:0005856 cytoskeleton

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000524s00019121.1	PF04130.8	Spc97_Spc98	184	705	1.40E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.743
SRR1783600	control	9.776
SRR1783602	moderate drought stress	10.331
SRR1811619	moderate drought stress	10.360

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.271
DRR006520	Root Summer glycyrrhizin high producing strain	9.311
DRR006521	Root Winter glycyrrhizin high producing strain	6.149
DRR006522	Root Winter glycyrrhizin high producing strain	6.002
DRR006523	Root Summer glycyrrhizin low producing strain	11.962
DRR006524	Root Summer glycyrrhizin low producing strain	12.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.481
SRR2868004	Drought Stress (root)	18.287
SRR2967015	Control (root)	19.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.367
SRR9715740	Leaf	6.382
SRR9715741	Leaf	6.256
SRR9715739	Root	8.773
SRR9715742	Root	12.050
SRR9715743	Root	11.877

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.059
SRR8749028	MeJA induced 9h	5.814
SRR8749029	MeJA induced 9h	2.814
SRR8749030	Uninduced	1.466
SRR8749031	Uninduced	0.540
SRR8749032	Uninduced	0.982

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.807
SRR8400027	Control - Root	16.596