Gene detail

Gene detail information of Glyur000524s00019117

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06690.1	2.00E-50	WCRKC thioredoxin 1
NR	NP_001239801.1	7.34E-96	uncharacterized protein LOC100783648 [Glycine max]
COG	YP_005845734.1	1.00E-09	thiol-disulfide isomerase/thioredoxin domain-containing protein [Ignavibacterium album JCM 16511]
Swissprot	tr\|Q9FG36\|TRL31_ARATH	6.00E-62	Thioredoxin-like 3-1, chloroplastic (Precursor)
trEMBL	tr\|C6TFV5\|C6TFV5_SOYBN	3.00E-96	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G30220.1}

Sequence

Transcript Sequence

>Glyur000524s00019117.1
CCCCAGATTCTTTCCCTTCTCATATGGTTTTCTTTCTTTCTTTTTTTTTTCCCTTCCTCCTATCATTTCTTAAGCCGTCATTGTGCACGCCTTGTGGATAAGCCTCGTTGGATCTGAGCCCTGTTTCCGGGTTTTTCAAAAACATTAACATTTTTTTTAATTTTCATTATTTCAATATATTTTCTCCCTTTTCTCCGACTTTACAATTAACATAATCCAAAACCAACAAAAATTTGACACCGTTCTCTTTTCCATTNACACGCACCGAGAATGATCTTGTTCTAATGTTCTTCTTTTCTTAGCCATCAACTTACTTAACCATCATCATCTTGTGATTTTTGTCTTGTTGTCCAATTAGGGAAAGCTTTGCGGTGCNAAGGGGTATGTCTGTTATTGGCGCATATTCACATTTTCTCTACAGAGAGATTTACCAACAGCAGAGAGATGAACAGTACTGTGTAAGTGAGAGGAGGGGTNTTGTGTTTTGGCGCAAGAGTGGTTGTGGGAACACATGGATTGAAAGCTGCAGAAACAGAGAACGCAAGATTGGAAGGAGGAACTTGAAGGTGGAAGCGATGTGGCCGGATCTGTCAAGACCCAGTACTGTAGAAATGGCAGCCATTAATGATTCTGAGCAGCTTGATCAAATTCTTGTTCATGCTCACCAAAACTCTGAGCCCATCCTTATTGACTGGATGGCTGCTTGGTGCCGGAAATGCATCTATTTGAAGCCCAAGTTGGAAAAATTAGCAGCTGAATTTGACACCAAACTCAAATTTTATTATGTGGATGTCAACAAAGTACCTCAGTCTCTAGTCAAGCGTGGCAACATCTCTGTAAGATTCACTTTTTCATTCTTTAAACGCTTTATTCTCTCTGGTAACAATAAAATGCCAACAATTCAGCTGTGGAAAGATGGAGAAATGAAAGCTGAAGTCATCGGAGGCCATAAGGCATGGCTAGTCATTGAAGAAGTCAGAGAAATGATCCAAAAGTATATATGATATCTTCTGATTTTTTTTTTTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00524	21205	23137	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000524s00019117.1	PF00085.15	Thioredoxin	94	160	8.40E-11
Glyur000524s00019117.2	PF00085.15	Thioredoxin	94	174	8.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.165
SRR1783600	control	3.062
SRR1783602	moderate drought stress	5.569
SRR1811619	moderate drought stress	5.836

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.767
DRR006520	Root Summer glycyrrhizin high producing strain	6.942
DRR006521	Root Winter glycyrrhizin high producing strain	7.289
DRR006522	Root Winter glycyrrhizin high producing strain	7.372
DRR006523	Root Summer glycyrrhizin low producing strain	8.591
DRR006524	Root Summer glycyrrhizin low producing strain	8.198
DRR006525	Leaf Summer glycyrrhizin high producing strain	96.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	95.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.918
SRR2868004	Drought Stress (root)	3.105
SRR2967015	Control (root)	8.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.667
SRR9715740	Leaf	90.901
SRR9715741	Leaf	66.628
SRR9715739	Root	0.352
SRR9715742	Root	3.007
SRR9715743	Root	1.552

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.424
SRR8749028	MeJA induced 9h	4.377
SRR8749029	MeJA induced 9h	2.946
SRR8749030	Uninduced	4.702
SRR8749031	Uninduced	5.957
SRR8749032	Uninduced	6.601

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.768
SRR8400027	Control - Root	10.911