Gene detail

Gene detail information of Glyur000524s00019111.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06710.1	3.00E-57	homeobox from Arabidopsis thaliana
NR	XP_003533912.1	1.79E-139	PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max]
Swissprot	tr\|P46665\|HAT14_ARATH	4.00E-88	Homeobox-leucine zipper protein HAT14
trEMBL	tr\|I1L2K9\|I1L2K9_SOYBN	7.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G16790.1}

Sequence

Transcript Sequence

>Glyur000524s00019111.1
ATGGAGCTGGCTTTGAGCTTAGGCGACCCACCAAAACCCTTCTCTTTCCTTGAAAACCCAACAAAAACATTACCCAACAACAACAAAGACCCACTGGGTTTCAACATAGCACTCGATGAAGAAGCTGCAAAATCCTCGGAGTACGAGAGACGAGGTTCCTCGGATCCACCCCTAATTCAGCTCGACCTTCTCCCTTCCACACCTGTTCTTCGATCTCACCACCTTCGAAATATTCCATGGCTCAACGATGCACTGGGTATGGAACGGGTGACAACAACAGAGGTACCTGCGGCGAGGGCGTTGGATGTGAACAGATTCAGGTTGCCGGCGACGGAGGACACCGACGACGGCGCTTCACTTTCATCCCCCAACAACAGTGCCGTGTCATCTTTTCAGATGGATTTCTCTATCATGAATGGTAATAATGGTGATGCTGCGGCGAGAAATTACAGGAGAGAGCACGAGCGTGCAGAGGGTGCAGACAGAGGAAGCGATGATGAAGAAAACGGCTCCACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCGGCTTTCCTTGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAACTTGCTCTTGCTAAGCAGTTAAATCTTCGTCCNCGTCAAGTAGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACAAAGTTAAAGCAGACGGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGACTCTGACAGAAGAGAATAGAAGGTTGCAGAAGGAACTGCAAGAACTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACCCTCACAATGTGTCCCTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCGCCGCCAACCAAACTACCTCCGTCACTGTCGCCGCCACAACCAACAACAATAATAATGGTTCTCAAGTCTCTGCCGCGTTCTCTCTTGGCAAGCCCATAATGTTGCCATTCCCTAATGGTCAGGCCCACCCGAAGCAGGCCCAGAAGGCTCATAAGATTGCCTCGTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00524	6334	8201	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000524s00019111.1	PF04618.7	HD-ZIP_N	28	130	8.80E-05
Glyur000524s00019111.1	PF00046.24	Homeobox	173	227	5.00E-15
Glyur000524s00019111.1	PF02183.13	HALZ	229	271	3.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.196
SRR1783600	control	0.208
SRR1783602	moderate drought stress	0.745
SRR1811619	moderate drought stress	0.785

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.158
DRR006520	Root Summer glycyrrhizin high producing strain	0.476
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.104
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.576

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.324
SRR2868004	Drought Stress (root)	1.924
SRR2967015	Control (root)	2.505

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.045
SRR9715740	Leaf	1.792
SRR9715741	Leaf	2.357
SRR9715739	Root	0.081
SRR9715742	Root	0.036
SRR9715743	Root	0.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.488
SRR8749028	MeJA induced 9h	0.254
SRR8749029	MeJA induced 9h	0.388
SRR8749030	Uninduced	0.060
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.926
SRR8400027	Control - Root	0.915