Gene detail information of Glyur000523s00021973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18524.1 | 2.00E-07 | MUTS homolog 2 |
| NR | XP_003549805.1 | 8.99E-13 | PREDICTED: DNA mismatch repair protein MSH2-like [Glycine max] |
| Swissprot | tr|O24617|MSH2_ARATH | 4.00E-09 | DNA mismatch repair protein MSH2 |
| trEMBL | tr|I1MUG2|I1MUG2_SOYBN | 3.00E-13 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G13050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00523 | 36780 | 37209 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.355 |
| SRR1783600 | control | 11.557 |
| SRR1783602 | moderate drought stress | 15.789 |
| SRR1811619 | moderate drought stress | 16.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.904 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.751 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.286 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.335 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.787 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.319 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.596 |
| SRR2868004 | Drought Stress (root) | 5.313 |
| SRR2967015 | Control (root) | 6.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.517 |
| SRR9715740 | Leaf | 2.631 |
| SRR9715741 | Leaf | 3.602 |
| SRR9715739 | Root | 0.434 |
| SRR9715742 | Root | 3.033 |
| SRR9715743 | Root | 1.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.195 |
| SRR8749028 | MeJA induced 9h | 10.018 |
| SRR8749029 | MeJA induced 9h | 0.883 |
| SRR8749030 | Uninduced | 0.263 |
| SRR8749031 | Uninduced | 0.237 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.542 |
| SRR8400027 | Control - Root | 9.575 |