Gene detail

Gene detail information of Glyur000523s00021970.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49010.1	1.00E-51	Duplicated homeodomain-like superfamily protein
NR	KHN10414.1	6.96E-167	Transcription factor MYB1R1 [Glycine soja]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	7.00E-56	Transcription factor DIVARICATA
trEMBL	tr\|I1MUF9\|I1MUF9_SOYBN	3.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G13010.1}

Sequence

Transcript Sequence

>Glyur000523s00021970.1
TGCAAATATCATTACTTATTTACATACTATGGTAACTTTGGTAGATGCATTTAGGACATGATGATAGAACAAAACATGAGTTTTTGCATAAGTGAAAAGAAAAAATTATATGAACTTATAACATGACAAATAACACATCCCTTAAATTACCGTGTGTGGTCCTCTAGACGTTGATTGTTTGATACCACTTTACTTCTTATCCTACACACATTGTGATTCTTCTCCTTATCCTGCGCATCCCTTCTGCTACTTTGTCATATAGAGACAAATTCCACACTAACAAAAAAAAAAGATTGACTTACACACCCATCTACCCAATTTTCACCATTATTTCTTCTCATCCTCTAAACTTGAACACACCATAATTGCAAATCCAACCAAGAGCCACCATGTCATCAAGTGGAACANCCATTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGATGAGGAAGCCTCATCAAAAGAGCAATGGGAAAAGATTGCCTCAGCAGTCCCCAACAAAAGCATGGAAGAAGTGAAGCAACATTACCAGTTATTGGTAGAGGATGTGAGTGCAATAGAGGCAGGTCATATACAATTCCCAAACTATGCTACAGAGGAAACCACATCTTCAAATAAAGATAATTCCCATGGCTCTTCCAAGGCTACAAGTTCAGATAAGAGATCAAATTGTGATTATGGAAGTGGGTTTTCTGGATTAGGACATGACTCGACACCCCGTAGTGGTAAAGGAGGCATGTCAAGGTCATCAGAACAAGAAAGGAGAAAGGGAATTCCATGGACAGAAGAAGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGGAGCATTTCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTGGCAAGCCACGCACAGAAGTACTTCATAAGGTTGAACTCAATGAATAGAGACAGGAGGAGGTCAAGTATCCATGACATCACAAGTGTGAACAATGGAGGAGATGTTGGAGGTGGAAGTAGTAATCAGGCACCAATAACAGGACAACACACAAGCACAATCCCTACAAGTACAATGGGAGTAGTAGGAGTAGGAGGACAATCATCACTGAAGCATAGAGTTCAACCACATCATCATCATCATCATCAACATCATATACCTGCTGCTGGTGGTGGTGGATTAGGCATGTATGGAACACCAGTTGGTCATCCTGTGGCTGCTCCTCATCATGGCCATATGGCATCTGCTGTTGGGACTCCTGTTATGCTTCCTCCTGGGCCCCACCCACATCCACCTTATGTTGTCCCTCTTGCTTACCCAATGGCACCACCAACAATGCACCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00523	12205	13770	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000523s00021970.1	PF00249.26	Myb_DNA-binding	9	58	1.00E-06
Glyur000523s00021970.1	PF00249.26	Myb_DNA-binding	138	182	6.90E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.947
SRR1783600	control	28.194
SRR1783602	moderate drought stress	32.503
SRR1811619	moderate drought stress	31.617

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.468
DRR006520	Root Summer glycyrrhizin high producing strain	7.657
DRR006521	Root Winter glycyrrhizin high producing strain	1.068
DRR006522	Root Winter glycyrrhizin high producing strain	0.926
DRR006523	Root Summer glycyrrhizin low producing strain	14.276
DRR006524	Root Summer glycyrrhizin low producing strain	14.467
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.262
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.608

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.428
SRR2868004	Drought Stress (root)	3.888
SRR2967015	Control (root)	1.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.768
SRR9715740	Leaf	14.575
SRR9715741	Leaf	9.987
SRR9715739	Root	0.695
SRR9715742	Root	4.285
SRR9715743	Root	3.067

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.052
SRR8749028	MeJA induced 9h	0.099
SRR8749029	MeJA induced 9h	0.090
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.583
SRR8400027	Control - Root	6.435